Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060121.seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 32 0.44
U40060-4|AAY86193.1| 406|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 29 2.3
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.3
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.3
AF016681-3|AAB66173.1| 159|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81489-11|CAJ30223.1| 323|Caenorhabditis elegans Hypothetical p... 29 4.1
U23484-16|AAK68297.1| 358|Caenorhabditis elegans Hypothetical p... 29 4.1
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 28 5.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 5.4
Z83216-7|CAB05676.2| 320|Caenorhabditis elegans Hypothetical pr... 27 9.4
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 27 9.4
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 27 9.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 9.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.4
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 27 9.4
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 27 9.4
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 27 9.4
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 27 9.4
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 27 9.4
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 27 9.4
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.44
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 4 HEEKCNRISSPLPGIANKLMKDNL-QVNVPDNL-IMNDKIYEKQDSETIYKQLLQLQEEN 177
+E+ + PGI KL + + P+ L I+ IY+ L Q Q E
Sbjct: 633 YEDPAYEFRTRHPGIMEKLRTLTVFDLEAPERLEIVKTLIYQLLTYSKFRGHLEQRQNEL 692
Query: 178 VKLKSENGKLIEKCVTKEGEASILR 252
V+LK E KL V +EGEA+ R
Sbjct: 693 VELKREQKKLKAWDVGQEGEANAAR 717
>U40060-4|AAY86193.1| 406|Caenorhabditis elegans Hypothetical
protein F38B6.8 protein.
Length = 406
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 19 NRISSPLPGIANKLMKDNLQVNVPDNLIMNDKIYEK---QDSETIYKQLLQLQEENVKLK 189
+R +SP GIAN ++ ++ DN N + + + S T L +++EEN KL+
Sbjct: 14 SRANSPTHGIANGVLSQIREMTKLDNFETNVAVLDSLKDEASSTRETSLSEMEEENKKLE 73
Query: 190 SENGKLI 210
N + +
Sbjct: 74 ISNDETV 80
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 303 MNVQEKLQMEWTEKINAINNQMHDLRTQLDFKVRI 407
+ +QE L+ EW + A M L T LDF +I
Sbjct: 322 LQIQENLKSEWLKNTLAEGGDMSKLSTSLDFVAKI 356
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 303 MNVQEKLQMEWTEKINAINNQMHDLRTQLDFKVRI 407
+ +QE L+ EW + A M L T LDF +I
Sbjct: 322 LQIQENLKSEWLKNTLAEGGDMSKLSTSLDFVAKI 356
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 124 KQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
+++++ +YK QLQ++ +L+ ENG I + K+ E
Sbjct: 2065 ERENKELYKNCAQLQQQIAQLEMENGNRILELTNKQRE 2102
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 HEEKCNRISSPL---PGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEE 174
H+ K + + L G KL N ++ I+N K+ D + + + + +L+ E
Sbjct: 842 HQGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLENE 901
Query: 175 NVKLKSENGKLIEK 216
KL++EN +L+ K
Sbjct: 902 LEKLRNENKELVGK 915
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 124 KQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
+++++ +YK QLQ++ +L+ ENG I + K+ E
Sbjct: 2138 ERENKELYKNCAQLQQQIAQLEMENGNRILELTNKQRE 2175
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 HEEKCNRISSPL---PGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEE 174
H+ K + + L G KL N ++ I+N K+ D + + + + +L+ E
Sbjct: 915 HQGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLENE 974
Query: 175 NVKLKSENGKLIEK 216
KL++EN +L+ K
Sbjct: 975 LEKLRNENKELVGK 988
>AF016681-3|AAB66173.1| 159|Caenorhabditis elegans Hypothetical
protein F22E5.9 protein.
Length = 159
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 91 DNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTS*KVF 270
D ++ K+Y + ++ + K L L +EN LK +N L + E R +F
Sbjct: 43 DEIVEKRKLYAESETAKLKKSLKDLSKENSDLKMQNLNL-----SAENSDLKSRGWLSIF 97
Query: 271 KLPLTVPG*RK 303
K P T P RK
Sbjct: 98 KSPKTEPESRK 108
>Z81489-11|CAJ30223.1| 323|Caenorhabditis elegans Hypothetical
protein C55A1.14 protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 528 FVYSYKKVFFYLIENSKNYHTDKTKLLYFIAN 433
FVYS F++ + N NY DKT LL+ I N
Sbjct: 28 FVYSVILPFYFYV-NKINYMKDKTTLLFPITN 58
>U23484-16|AAK68297.1| 358|Caenorhabditis elegans Hypothetical
protein EEED8.15 protein.
Length = 358
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +1
Query: 67 DNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQE----ENVKLKSENGKLIEKCVTKEG 234
D VN +I ND E + SETI +++ E NV ++ LIEK
Sbjct: 66 DEAGVNTSQEVIQNDDTEESEKSETISREVSNTDEFGIGNNVGFTAKVDDLIEKIAEAVK 125
Query: 235 EASILRTS 258
+ I T+
Sbjct: 126 DQQISETT 133
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 240 LNTKNQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQ 365
L K+ +K +Q A+ A+ + + +EKL+ TEKI I Q
Sbjct: 590 LTEKDSVKRLQDEAEKAKKQVADFEEKLKEIETEKIALIKKQ 631
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 HEEKCNRISSPL---PGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEE 174
H+ K + + L G KL N ++ I+N K+ D + + + + +L+ E
Sbjct: 915 HQGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLENE 974
Query: 175 NVKLKSENGKLIEK 216
KL++EN +L+ K
Sbjct: 975 LEKLRNENKELVGK 988
>Z83216-7|CAB05676.2| 320|Caenorhabditis elegans Hypothetical
protein C08F11.9 protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 501 FYLIENSKNYHTDKTKLLYFIAN 433
FY+ N KN ++DKT LL+ + N
Sbjct: 41 FYVYVNKKNQNSDKTALLFPMTN 63
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 88 PDNLIMNDKIYEKQDSETIYKQLLQ-LQEENVKLKSENGKL 207
P + ++ K+ +D ETIYK +Q LQ + K + GKL
Sbjct: 347 PSHSGLHSKMQGPKDDETIYKNKMQELQLQTAKFIGDFGKL 387
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 258 LKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQLDFKVR 404
L+++QV +A L + + E + + W NA+N Q R+ +R
Sbjct: 1721 LQAVQVEFANAHLVEKSANEGMVLNWEFVSNAVNKQTRFFRSARQCSIR 1769
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 258 LKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQLDFKVR 404
L+++QV +A L + + E + + W NA+N Q R+ +R
Sbjct: 1721 LQAVQVEFANAHLVEKSANEGMVLNWEFVSNAVNKQTRFFRSARQCSIR 1769
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 106 NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
N+++ D++TI QLLQ+ KLK EN + + KEG+
Sbjct: 1526 NEQVMTIIDNDTIVPQLLQVAAAANKLKLEN---VSVALIKEGD 1566
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,244
Number of Sequences: 27780
Number of extensions: 245909
Number of successful extensions: 736
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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