Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060121.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.3  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   8.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 309 VQEKLQMEWTEKINAINNQM 368
           V+EK Q+ + E++NA+  ++
Sbjct: 45  VEEKTQLRYLEELNALRTEL 64


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 351 HLFSPSIPSAVFLAHSFSLAW 289
           HLF   IPSA+ +  S+   W
Sbjct: 216 HLFHTYIPSALIVVMSWIAFW 236


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 16  CNRISSPLPGIANKLMKDNLQVNVP 90
           CNR +S   GIAN L+   +Q N P
Sbjct: 65  CNRCTSRQIGIANTLI-PFMQQNYP 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,314
Number of Sequences: 438
Number of extensions: 2937
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)