Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060121.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    34   0.076
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    34   0.076
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains...    30   1.6  
At5g08141.1 68418.m00950 bZIP transcription factor family protei...    29   2.9  
At1g79930.1 68414.m09340 heat shock protein, putative contains P...    28   5.0  
At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70...    28   5.0  
At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70...    28   5.0  
At1g13635.1 68414.m01602 methyladenine glycosylase family protei...    28   6.6  
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    28   6.6  
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela...    28   6.6  
At5g54070.1 68418.m06731 heat shock transcription factor family ...    27   8.8  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +1

Query: 130 DSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTS*KVFKLPLTVPG*RK 303
           D   +Y QL +LQ++N +++  N  L  K  TKE E   L T   V +   TVP  RK
Sbjct: 59  DVGALYSQLKELQKKNAEMEERNKILSSKLQTKEVENESLETRLNVLE-QNTVPSLRK 115


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +1

Query: 130 DSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTS*KVFKLPLTVPG*RK 303
           D   +Y QL +LQ++N +++  N  L  K  TKE E   L T   V +   TVP  RK
Sbjct: 59  DVGALYSQLKELQKKNAEMEERNKILSSKLQTKEVENESLETRLNVLE-QNTVPSLRK 115


>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 576

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +1

Query: 85  VPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILR 252
           V + L+ ND + +  +    + ++ +++ E  K K+E  +L  K  TKEG  S+++
Sbjct: 477 VAEQLMRNDSVDKVLEGLIEFLKVKKIENEQDKAKTEKQELENKKKTKEGTDSVVK 532


>At5g08141.1 68418.m00950 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 137

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 19  NRISSPLPGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLK 189
           NR S+    +  ++MK+ LQ+ V   +  N  +Y K  S   Y    Q+ +EN +LK
Sbjct: 45  NRESARRTRMRERMMKEGLQMQVKQLMAYNQFLYNKYISLLEYNH--QILQENSQLK 99


>At1g79930.1 68414.m09340 heat shock protein, putative contains Pfam
           profile: PF00012 Heat shock hsp70 proteins; similar to
           heat-shock proteins GB:CAA94389, GB:AAD55461
           [Arabidopsis thaliana]
          Length = 831

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = +3

Query: 258 LKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQLDFK 398
           LK+++V     +  +M +Q+++  E  ++ NA+ + ++D+R +L  K
Sbjct: 594 LKTVEVEKAVEKEFEMALQDRVMEETKDRKNAVESYVYDMRNKLSDK 640


>At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70,
           putative contains Pfam profile: PF00012 Heat shock hsp70
           proteins; similar to heat-shock proteins GB:CAA94389,
           GB:AAD55461 [Arabidopsis thaliana]
          Length = 736

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = +3

Query: 258 LKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQLDFK 398
           LK+++V     +  +M +Q+++  E  ++ NA+ + ++D+R +L  K
Sbjct: 594 LKTVEVEKAVEKEFEMALQDRVMEETKDRKNAVESYVYDMRNKLSDK 640


>At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70,
           putative contains Pfam profile: PF00012 Heat shock hsp70
           proteins; similar to heat-shock proteins GB:CAA94389,
           GB:AAD55461 [Arabidopsis thaliana]
          Length = 736

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = +3

Query: 258 LKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQLDFK 398
           LK+++V     +  +M +Q+++  E  ++ NA+ + ++D+R +L  K
Sbjct: 594 LKTVEVEKAVEKEFEMALQDRVMEETKDRKNAVESYVYDMRNKLSDK 640


>At1g13635.1 68414.m01602 methyladenine glycosylase family protein
           Contains Pfam profile PF03352:  Methyladenine
           glycosylase
          Length = 311

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 112 KIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEAS 243
           K+ EK+ +E    + + LQE  V+   +N K I K V + G  S
Sbjct: 185 KMGEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFS 228


>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 1128

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 121 EKQDSETIYKQLLQLQEENVKLK-SENGKLIE 213
           EKQ  + + K L ++QEEN K++ S   KL+E
Sbjct: 159 EKQCVQELEKALREIQEENSKIRLSSEAKLVE 190


>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 391

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 121 EKQDSETIYKQLLQLQEENVKLK-SENGKLIE 213
           EKQ  + + K L ++QEEN K++ S   KL+E
Sbjct: 172 EKQCVQELEKALREIQEENSKIRLSSEAKLVE 203


>At5g54070.1 68418.m06731 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 331

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/60 (21%), Positives = 33/60 (55%)
 Frame = +3

Query: 207 N*KMCNQRR*SLNTKNQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQ 386
           N K CN+   +  T+ +++S++      RLE + ++++ Q E   ++  +  ++H + T+
Sbjct: 164 NTKCCNKEASTTTTETEVESLKEEQSPMRLEMLKLKQQ-QEESQHQMVTVQEKIHGVDTE 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,773
Number of Sequences: 28952
Number of extensions: 210751
Number of successful extensions: 474
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)