Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060120.seq
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2NI17 Cluster: Predicted glycosyltransferase; n=1; Met...    34   2.8  
UniRef50_A2EVV4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  

>UniRef50_Q2NI17 Cluster: Predicted glycosyltransferase; n=1;
           Methanosphaera stadtmanae DSM 3091|Rep: Predicted
           glycosyltransferase - Methanosphaera stadtmanae (strain
           DSM 3091)
          Length = 377

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 366 LFVYLRELKCWFDSNIPKIIYIYLHLLK---NPLPIRYVNK 253
           LF+Y  ++K W D NI K   I+LH L+   N + I+Y  K
Sbjct: 68  LFIYSPKMKKWLDKNITKYDIIHLHELRSYQNNIVIKYAKK 108


>UniRef50_A2EVV4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 274

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 132 RYYNINFNLIIDANENFTLIWRQLIN*TKKVNPQICCTS 248
           ++ NI + +++  NEN T +  +L+N TKK  P+I   S
Sbjct: 93  KFTNIKYEIVLCINENITTVPSKLLNLTKKKTPRITIIS 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,579,714
Number of Sequences: 1657284
Number of extensions: 9426905
Number of successful extensions: 15424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15420
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)