Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060120.seq
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028689-1|AAH28689.2| 1050|Homo sapiens tripartite motif-contai...    31   2.8  
AF119042-1|AAD17258.1| 1016|Homo sapiens transcriptional interme...    31   2.8  
AF009353-1|AAB63585.1| 1012|Homo sapiens transcription intermedi...    31   2.8  

>BC028689-1|AAH28689.2| 1050|Homo sapiens tripartite motif-containing
            24 protein.
          Length = 1050

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 366  LFVYLRELKCWFDSNIPKIIYIYLHLLKNPLPIRYVNKR 250
            LF+Y  E+   F   +P  +  Y  ++KNP+ +  + KR
Sbjct: 913  LFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKR 951


>AF119042-1|AAD17258.1| 1016|Homo sapiens transcriptional
           intermediary factor 1 alpha protein.
          Length = 1016

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 366 LFVYLRELKCWFDSNIPKIIYIYLHLLKNPLPIRYVNKR 250
           LF+Y  E+   F   +P  +  Y  ++KNP+ +  + KR
Sbjct: 879 LFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKR 917


>AF009353-1|AAB63585.1| 1012|Homo sapiens transcription intermediary
           factor 1 protein.
          Length = 1012

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 366 LFVYLRELKCWFDSNIPKIIYIYLHLLKNPLPIRYVNKR 250
           LF+Y  E+   F   +P  +  Y  ++KNP+ +  + KR
Sbjct: 875 LFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKR 913


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,476,005
Number of Sequences: 237096
Number of extensions: 1285991
Number of successful extensions: 1229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)