Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060119.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    28   6.0  
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    28   7.9  

>09_06_0311 +
           22218219-22218421,22219157-22219422,22219881-22220050,
           22220149-22220365,22220798-22221021,22221559-22221738,
           22221875-22222013,22222107-22222255,22223394-22223505,
           22223998-22224506,22224661-22224784,22224904-22225178,
           22225507-22225626,22225707-22225769,22225861-22226052,
           22226381-22226440,22226535-22226738,22226926-22227051,
           22227093-22227254,22227357-22227476,22227665-22227820,
           22227895-22227957,22228041-22228168,22228524-22228920,
           22229442-22229544,22229646-22229776,22230096-22230167,
           22230472-22230553,22231083-22231190,22231288-22231429,
           22231659-22231698,22231746-22231876,22232215-22232301,
           22232395-22232605,22232687-22232741,22232836-22232927,
           22233011-22233071,22233361-22233719
          Length = 2010

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 208 CSVTLRHALIHKYYTRQRVNVLNASYMVGXSVGCKVFSLRNFMIR 342
           CS + R A I  Y  R+  +V     + G ++ CKVF  R   IR
Sbjct: 88  CSTSARLASIAPYSGRKETSVYATDIISGITIHCKVFVDRISRIR 132


>03_02_1023 +
           13265179-13265330,13265526-13265637,13265752-13266048,
           13266361-13266623,13267637-13267847,13268420-13268590,
           13268671-13268748,13269275-13269520,13269763-13271868,
           13272122-13273904,13274113-13274216,13274752-13275108,
           13275210-13275328,13276175-13276436,13276669-13276893,
           13277075-13277214,13278087-13278159,13278431-13278532,
           13278647-13279018,13279183-13279230,13279516-13279900,
           13280440-13280558
          Length = 2574

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +1

Query: 298 SVGCKVFS---LRNFMIRSPR**INSLXTFAVFLFIKRP 405
           S+GC+ FS   LR+  I+SP+  ++S+    + L ++RP
Sbjct: 68  SIGCRSFSFNYLRDITIKSPKGAVDSICVGEIRLGLRRP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,104
Number of Sequences: 37544
Number of extensions: 222025
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)