Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060119.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          29   2.7  
SB_10205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
 Frame = -2

Query: 342 PNHEIP*RKNLTPHTXPYHVARVQH----------IHTLPC 250
           P+H IP     T HT PYH  +  H           HT+PC
Sbjct: 314 PHHTIPCHTTRTCHTIPYHTTQYYHYTNMSHNTVSYHTIPC 354


>SB_10205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 321 RKNLTPHTXPYHVARVQHIH 262
           +K  T HT P+HV  V H+H
Sbjct: 907 QKGRTKHTVPHHVLTVDHVH 926


>SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 357 LLARRPNHEIP*R-KNLTPHTXPYHVARVQHI 265
           ++AR   + I  R K  T HT P+HV +V H+
Sbjct: 838 IIARIKRYAIDDRQKGRTKHTGPHHVLKVDHV 869


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,215
Number of Sequences: 59808
Number of extensions: 290476
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)