Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060119.seq
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.9  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.9  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   3.9  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    24   3.9  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 140 LMFNIAWSCFIIVLILNYH 84
           +MF +A S  + V++LNYH
Sbjct: 301 IMFMVASSVVLTVVVLNYH 319


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 140 LMFNIAWSCFIIVLILNYH 84
           +MF +A S  + V++LNYH
Sbjct: 301 IMFMVASSVVLTVVVLNYH 319


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 140 LMFNIAWSCFIIVLILNYH 84
           +MF +A S    +LILNYH
Sbjct: 284 IMFMVASSVVSTILILNYH 302


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 140 LMFNIAWSCFIIVLILNYH 84
           +MF +A S    +LILNYH
Sbjct: 316 IMFMVASSVVSTILILNYH 334


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,496
Number of Sequences: 2352
Number of extensions: 9735
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)