Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060117.seq
         (559 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   4.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   5.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.4  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   7.2  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   7.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.2  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   7.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   7.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.2  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 247 RTAETVPGYCQ*QAHRHGSRKERPLRRIVTCPYRRVSLG 131
           R   T+PG  +  AH    +K R  +R   C Y    LG
Sbjct: 96  RLVWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLG 134


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 247 RTAETVPGYCQ*QAHRHGSRKERPLRRIVTCPYRRVSLG 131
           R   T+PG  +  AH    +K R  +R   C Y    LG
Sbjct: 410 RLVWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLG 448


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 247 RTAETVPGYCQ*QAHRHGSRKERPLRRIVTCPYRRVSLG 131
           R   T+PG  +  AH    +K R  +R   C Y    LG
Sbjct: 643 RLVWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLG 681


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 247 RTAETVPGYCQ*QAHRHGSRKERPLRRIVTCPYRRVSLG 131
           R   T+PG  +  AH    +K R  +R   C Y    LG
Sbjct: 643 RLVWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLG 681


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 378 GRHHRAHSGRQPQAIR 425
           GRH+++ S RQP+  R
Sbjct: 208 GRHNQSRSKRQPKTGR 223


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 161 DNTAEWSFLAASVPMCLSLAIAGNSFCGSDVEDSSSIPKL 280
           DN +     A S P  LSL++A NS     +E + +I  L
Sbjct: 453 DNVSLSQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSL 492


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 32  YGLWNLRATNTG 67
           YG++N+RA  TG
Sbjct: 331 YGVFNIRARRTG 342


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 161 DNTAEWSFLAASVPMCLSLAIAGNSFCGSDVEDSSS 268
           D  A     A  VP C +  +AG   C +  E S+S
Sbjct: 131 DREARVCMWADQVPECKNEEVAGGFTCPAPGEVSNS 166


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 161 DNTAEWSFLAASVPMCLSLAIAGNSFCGSDVEDSSS 268
           D  A     A  VP C +  +AG   C +  E S+S
Sbjct: 131 DREARVCMWADQVPECKNEEVAGGFTCPAPGEVSNS 166


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 32  YGLWNLRATNTG 67
           YG++N+RA  TG
Sbjct: 331 YGVFNIRARRTG 342


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 67  ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 109


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 192 AARNDHSAVLSPVHTAEYLWVPANXALVSRKGL*TPSARSSSP 64
           A+  D S   +P  +   L  P+N       GL +P + S+SP
Sbjct: 111 ASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,311
Number of Sequences: 336
Number of extensions: 2567
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)