Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060117.seq
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)             117   8e-27
SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              54   1e-07
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.28 
SB_17951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_46315| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.39)           29   3.4  
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)                29   3.4  
SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)                   28   4.5  
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)                    27   7.9  

>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score =  117 bits (281), Expect = 8e-27
 Identities = 51/83 (61%), Positives = 62/83 (74%)
 Frame = +2

Query: 5   WEHRHVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSF 184
           WEHR VHN YG++  +ATN GL+ R+ G  RPF+L+RA FAGTQRY  +WTGDN AEWS 
Sbjct: 486 WEHRDVHNIYGMYFHKATNLGLIQRSGGKDRPFVLSRAFFAGTQRYGPIWTGDNMAEWSH 545

Query: 185 LAASVPMCLSLAIAGNSFCGSDV 253
           L AS+PM LSL + G  F G+DV
Sbjct: 546 LKASIPMILSLGVTGLPFAGADV 568



 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/78 (57%), Positives = 53/78 (67%)
 Frame = +1

Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
           GFFK PE EL+ RWYQ   F PF RAH+H++TKRREPWL  D    +IRDA R RYALL 
Sbjct: 570 GFFKNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYALLP 629

Query: 436 XWYTLXYEHTVDGLTXMR 489
            WYTL +  + DG   +R
Sbjct: 630 LWYTLFFHASQDGTPIIR 647


>SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 388

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 33/100 (33%), Positives = 43/100 (43%)
 Frame = +1

Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
           GF      EL  RW Q  AF PF R H+      ++P    D    + R     RY +L 
Sbjct: 259 GFLGNTNYELCARWTQLGAFYPFSRNHNTKGATPQDPASFGDKFASMARGVLLTRYRMLP 318

Query: 436 XWYTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLG 555
             YTL ++    G T  RPLF  +     T  ID Q++ G
Sbjct: 319 YLYTLFFDAYNMGSTVARPLFFEFPKDAKTLAIDRQFMWG 358



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 25/83 (30%), Positives = 42/83 (50%)
 Frame = +2

Query: 5   WEHRHVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSF 184
           + H  VH+ YG     AT + L +   G  R  +++R+ F  + ++   W GDN A W  
Sbjct: 177 YRHYDVHSLYGYTETVATMSAL-ESIRGK-RSMVISRSTFPNSGQHGGHWLGDNQATWES 234

Query: 185 LAASVPMCLSLAIAGNSFCGSDV 253
           +  SVP  L++ + G    G+D+
Sbjct: 235 MYLSVPGILNMNMFGIPLVGADI 257


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 23/99 (23%), Positives = 38/99 (38%)
 Frame = +1

Query: 262 FKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLDXW 441
           F  P+ EL  RW QAA F P  +           PWL    T  + +     R  + +  
Sbjct: 558 FNKPDNELYVRWMQAAVFLPTMQFSF-------PPWLYGSNTINIAKRLLDLRAKISETL 610

Query: 442 YTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLGD 558
                +        +RPL+    +  +   +D ++L+GD
Sbjct: 611 ILFARQVNQSTAPIIRPLWWVAPNDDIALTLDSEFLVGD 649


>SB_17951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 61  HGAAGPRRRRLQTLPAHEGRVRRHPEILCGMDR*QYGGV--VVPCGFRADV 207
           +G  G   R L+ +     ++R + E++ G    +YGG   V PC FRA++
Sbjct: 21  NGKIGNGNRTLKGMLKKSSKIRENSEVV-GWSIVRYGGFGNVAPCDFRAEI 70


>SB_46315| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.39)
          Length = 310

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 291 RHELSFGILEESSTSEPQKLFPAIASDKH--IGTEAAR-NDHSAVLSPVHTAEYL 136
           R +   G+L+E+  S+P+K +  I S +   +G  A R ND + + +P   AE L
Sbjct: 254 RDKFVCGLLDENYKSQPKKFWKYIKSKRQDSVGIPALRPNDTTTLTAPKEKAEAL 308


>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
          Length = 556

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 354 LGLDVRVGPKERLERGRLVPPRHELSFGILEESSTSEPQKLFPAIASDKH 205
           L   VR  PK + E  +L+P  HE+    +E+  +SE  K + A+    H
Sbjct: 465 LSNSVRNVPKGKEELAKLIPKYHEIMIKTIEQDPSSE--KSYQALRDTTH 512


>SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)
          Length = 625

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 282 LSFGILEESSTSEPQKLFPAIASDKHIGTEAARNDH 175
           +S    ++SS+SE Q   PAI + + +G + + +DH
Sbjct: 434 VSLSSSQDSSSSESQVSHPAIETPRQLGFQLSADDH 469


>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 252 TSEPQKLFPAIASDKHIGTEAARNDHSAVLSPVHT-AEYLWVPANXALVSRKGL*TPSAR 76
           TS+ Q LFPA+ +  H    +    H A L P  T    +W  +N A  + + +  P+A 
Sbjct: 369 TSQQQHLFPAVNASTHTQISSVWGSHEAGLHPQWTPVNQVW--SNDAQQTYE-VTNPNAY 425

Query: 75  SSSPV 61
            S+P+
Sbjct: 426 WSTPI 430


>SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)
          Length = 510

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 77  RADGVYRPFLLTRAXFAGTQRYSAVWTGDNT 169
           R +  + PFL     + G +    +W GDNT
Sbjct: 133 RDESPFFPFLFPEKSYTGEEPIELLWAGDNT 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,885,424
Number of Sequences: 59808
Number of extensions: 344663
Number of successful extensions: 1162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)