Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060117.seq
(559 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical ... 123 1e-28
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 121 4e-28
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 121 4e-28
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 52 2e-07
U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81073-1|CAB03029.1| 645|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 27 9.1
>AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical
protein F52D1.1 protein.
Length = 903
Score = 123 bits (296), Expect = 1e-28
Identities = 53/101 (52%), Positives = 68/101 (67%)
Frame = +1
Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
GFF P+ EL+ RWYQA AFQPFFR HSH +TKRREPWL D TT IR+A + RYA L
Sbjct: 602 GFFGNPDEELLVRWYQAGAFQPFFRGHSHQDTKRREPWLFADNTTEAIRNAIKTRYAFLP 661
Query: 436 XWYTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLGD 558
WYTL YEH G MRP + +++ ++ D Q+++G+
Sbjct: 662 YWYTLFYEHAKTGKPVMRPFWMEFIEDEPSWDEDRQWMVGN 702
Score = 95.1 bits (226), Expect = 3e-20
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = +2
Query: 5 WEHRHVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSF 184
+EHR VHN YG +T GL R++ RPF+L+R+ FAG+QR +AVWTGDN A+W+
Sbjct: 518 FEHRDVHNVYGFHQHSSTFEGLKARSNNEVRPFVLSRSFFAGSQRTAAVWTGDNKADWAH 577
Query: 185 LAASVPMCLSLAIAGNSFCGSDV 253
L S+PM LSL+ AG F G+DV
Sbjct: 578 LKQSIPMLLSLSTAGLPFVGADV 600
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 121 bits (291), Expect = 4e-28
Identities = 52/100 (52%), Positives = 71/100 (71%)
Frame = +1
Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
GFF P+ +L++RWYQ AAFQPFFRAH+HI+T+RREPWL + T +IR+A R RYALL
Sbjct: 610 GFFGNPDEQLLSRWYQTAAFQPFFRAHAHIDTRRREPWLFSEQTQQIIREALRTRYALLP 669
Query: 436 XWYTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLG 555
WYTL +HT +G+ MRPLF + + + Q+++G
Sbjct: 670 YWYTLFQQHTENGVPPMRPLFYEFENDDLLLEEQKQWMVG 709
Score = 101 bits (243), Expect = 3e-22
Identities = 46/82 (56%), Positives = 57/82 (69%)
Frame = +2
Query: 8 EHRHVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSFL 187
EHR +HN YG+ AT G++ R G RPFLL+RA F GTQR +A+WTGDNTA+W L
Sbjct: 527 EHREIHNMYGMMYTSATFDGMIARTGGKERPFLLSRAGFIGTQRTAAIWTGDNTADWGHL 586
Query: 188 AASVPMCLSLAIAGNSFCGSDV 253
+ PM LSL+IAG F G+DV
Sbjct: 587 EIAAPMTLSLSIAGVPFVGADV 608
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 121 bits (291), Expect = 4e-28
Identities = 52/100 (52%), Positives = 71/100 (71%)
Frame = +1
Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
GFF P+ +L++RWYQ AAFQPFFRAH+HI+T+RREPWL + T +IR+A R RYALL
Sbjct: 624 GFFGNPDEQLLSRWYQTAAFQPFFRAHAHIDTRRREPWLFSEQTQQIIREALRTRYALLP 683
Query: 436 XWYTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLG 555
WYTL +HT +G+ MRPLF + + + Q+++G
Sbjct: 684 YWYTLFQQHTENGVPPMRPLFYEFENDDLLLEEQKQWMVG 723
Score = 101 bits (243), Expect = 3e-22
Identities = 46/82 (56%), Positives = 57/82 (69%)
Frame = +2
Query: 8 EHRHVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSFL 187
EHR +HN YG+ AT G++ R G RPFLL+RA F GTQR +A+WTGDNTA+W L
Sbjct: 541 EHREIHNMYGMMYTSATFDGMIARTGGKERPFLLSRAGFIGTQRTAAIWTGDNTADWGHL 600
Query: 188 AASVPMCLSLAIAGNSFCGSDV 253
+ PM LSL+IAG F G+DV
Sbjct: 601 EIAAPMTLSLSIAGVPFVGADV 622
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 54.0 bits (124), Expect = 7e-08
Identities = 30/100 (30%), Positives = 47/100 (47%)
Frame = +1
Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
GF EL RW Q AF FFR H+ + ++P + + AN RY L
Sbjct: 552 GFLGTSNEELCLRWQQMGAFHSFFRNHNTLGEPAQDPAVWPS-VAAATKIANLFRYQYLP 610
Query: 436 XWYTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLG 555
++L ++ + DGLT +RP+F + T + Q++ G
Sbjct: 611 HLFSLHFQASKDGLTVVRPVFFEFPTDSATLDLGYQFMWG 650
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/78 (35%), Positives = 36/78 (46%)
Frame = +2
Query: 20 VHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSFLAASV 199
V N +GL T LLD R +++R+ F RY+ W GDNTA W L SV
Sbjct: 475 VKNLFGLTEAIQTQQALLDVTGK--RGAVVSRSTFPSAGRYAGHWLGDNTARWEDLRTSV 532
Query: 200 PMCLSLAIAGNSFCGSDV 253
+ G + GSDV
Sbjct: 533 IGAQEFNLFGIPYVGSDV 550
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/100 (29%), Positives = 45/100 (45%)
Frame = +1
Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
GF EL RW Q AF FFR H+ I ++P + AN RY L
Sbjct: 619 GFIGTTTEELCLRWQQMGAFHSFFRNHNTIGAPAQDP-AVWPSVAAATKKANLFRYQYLP 677
Query: 436 XWYTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLG 555
++L + ++ G T +RP+F Y T+ + +++ G
Sbjct: 678 YLFSLHFTASLSGATVIRPVFFEYPTDAETFNLGYEFMWG 717
Score = 44.4 bits (100), Expect = 6e-05
Identities = 28/79 (35%), Positives = 38/79 (48%)
Frame = +2
Query: 17 HVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSFLAAS 196
+V N YGL T L +A G R +++R+ + RY+ W GDNTA W L S
Sbjct: 541 NVKNLYGLTEAINTQKALF-KATGK-RGAVVSRSTYPSAGRYAGHWLGDNTARWEDLRTS 598
Query: 197 VPMCLSLAIAGNSFCGSDV 253
V + G + GSDV
Sbjct: 599 VIGAQEFNLFGIPYVGSDV 617
>U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical
protein D2096.3 protein.
Length = 936
Score = 47.6 bits (108), Expect = 6e-06
Identities = 32/100 (32%), Positives = 43/100 (43%)
Frame = +1
Query: 256 GFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLXXDGTTVLIRDANRKRYALLD 435
GF EL RW+Q AF PF R H+ ++P + + A RY L
Sbjct: 624 GFNGVSNEELCLRWHQFGAFSPFSRDHNSEGMPDQDPAVWPSVANAA-KIALTFRYYFLP 682
Query: 436 XWYTLXYEHTVDGLTXMRPLFQXYLDXPVTYXIDDQYLLG 555
Y+L Y G T +RPLF + T I +Q+L G
Sbjct: 683 FLYSLHYNAARYGHTVIRPLFFEFPKDEETLNISEQFLWG 722
Score = 44.0 bits (99), Expect = 7e-05
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +2
Query: 26 NEYGLWNLRATNTGLLDRADGVYRPFLLTRAXFAGTQRYSAVWTGDNTAEWSFLAASVPM 205
N YG RAT + + G R +++R+ F + RY W GDNTA W L SV
Sbjct: 549 NLYGWSEARATYQAI-PQVTGK-RSAVISRSTFPSSGRYGGHWLGDNTARWGDLQTSVIG 606
Query: 206 CLSLAIAGNSFCGSDV 253
+ + G + GSD+
Sbjct: 607 VMEFNMFGVPYVGSDI 622
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 54 PPTRGCWTAPTASTDPSCSRGPXSQAPRDTLRYGQVTIR 170
PP RG AP P+ P ++AP T R T R
Sbjct: 295 PPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTR 333
>Z81073-1|CAB03029.1| 645|Caenorhabditis elegans Hypothetical
protein F30F8.1 protein.
Length = 645
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 330 PKERLERGRLVPPRHELSFGILEESSTSEPQKLFPAIASDKHI 202
P E++E+ + ++ + I + + +P K P IAS K I
Sbjct: 212 PAEQIEQSTWLSESNDAAINISQNNDVIDPNKTIPFIASGKSI 254
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 66 GCWTAPTASTDPSCSRGPXSQAPRDTL 146
GC +P+++T P RGP QA D L
Sbjct: 130 GCQCSPSSNTCPPGPRGPPGQAGLDGL 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,766
Number of Sequences: 27780
Number of extensions: 235788
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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