Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060116.seq
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   4.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   6.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   9.2  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 187 SIGCY--FYDRTLTSRMRLSETEI*KVNSECEHEQML 291
           ++ CY    ++T+  R+R   TEI   N E  +E +L
Sbjct: 308 ALTCYELSLNKTIQDRLRHEVTEIYNENGEFTYENIL 344


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 557 LITPICLIFRESRLPSHXNEHSAS 486
           L TP C     S  PSH +E S S
Sbjct: 191 LPTPTCSEASSSPTPSHSSESSFS 214


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 122 G*QYSWRS*FCD 87
           G  Y WRS +CD
Sbjct: 74  GCDYPWRSNYCD 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,223
Number of Sequences: 336
Number of extensions: 3097
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)