Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060115.seq
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 95 9e-21
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 95 9e-21
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 46 7e-06
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 46 7e-06
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 1.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 26 5.9
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 95.1 bits (226), Expect = 9e-21
Identities = 59/151 (39%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDD----DNKRSFCMYVLDPIYXXFDAIMKF 420
+F ID K+M RLWGEN+FNP TKKWSK D N+R+F M++LDPIY FDA+M
Sbjct: 232 KFGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNS 291
Query: 421 KKEEXDDLLXKIGVTIKHXDXXKDGKXXXXXXXXXXXXXVKXCFX*LPFIYHHL*WP--- 591
+K+E LL K+ VTIK + +GK + I HL P
Sbjct: 292 RKDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADAL---MEMIVLHLPSPKTA 348
Query: 592 SKYRMEMLXRXXPIDG*SCPLGXXXCXXEGP 684
+YR E L P+D C +G C P
Sbjct: 349 QQYRAETLYE-GPMDD-ECAVGIRNCDANAP 377
Score = 85.0 bits (201), Expect = 9e-18
Identities = 39/81 (48%), Positives = 53/81 (65%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
RP++ +NK+DR YQ F R+VE+VNV+I+TY D +G +V P KG+V
Sbjct: 152 RPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTV 209
Query: 188 GFGSGLHGWAFTLKQFSEMYA 250
F SGLHGWAFT++QF+ YA
Sbjct: 210 AFASGLHGWAFTVRQFANRYA 230
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 95.1 bits (226), Expect = 9e-21
Identities = 59/151 (39%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDD----DNKRSFCMYVLDPIYXXFDAIMKF 420
+F ID K+M RLWGEN+FNP TKKWSK D N+R+F M++LDPIY FDA+M
Sbjct: 232 KFGIDRNKMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNS 291
Query: 421 KKEEXDDLLXKIGVTIKHXDXXKDGKXXXXXXXXXXXXXVKXCFX*LPFIYHHL*WP--- 591
+K+E LL K+ VTIK + +GK + I HL P
Sbjct: 292 RKDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADAL---MEMIVLHLPSPKTA 348
Query: 592 SKYRMEMLXRXXPIDG*SCPLGXXXCXXEGP 684
+YR E L P+D C +G C P
Sbjct: 349 QQYRAETLYE-GPMDD-ECAVGIRNCDANAP 377
Score = 85.0 bits (201), Expect = 9e-18
Identities = 39/81 (48%), Positives = 53/81 (65%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
RP++ +NK+DR YQ F R+VE+VNV+I+TY D +G +V P KG+V
Sbjct: 152 RPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTV 209
Query: 188 GFGSGLHGWAFTLKQFSEMYA 250
F SGLHGWAFT++QF+ YA
Sbjct: 210 AFASGLHGWAFTVRQFANRYA 230
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 262 IDLVKLMNRLWGENFFNPXTKKWSKQK-DDDNKRSFCMYVLDPIYXXFDAIMKFKKEEXD 438
ID+ RLWG+ +F+ T+K++KQ D RSF ++L+P+Y + + E+
Sbjct: 345 IDVDLFSKRLWGDIYFDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDEAEKLK 404
Query: 439 DLLXKIGVTIKHXDXXKDGK 498
L + +K D D K
Sbjct: 405 KHLSSFQIYLKPKDYLLDPK 424
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 14 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSVGF 193
+L +NK+DR Y + +++ VN I D RV P G+V F
Sbjct: 265 VLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQISKDL----KYRVSPELGNVCF 320
Query: 194 GSGLHGWAFTLKQFSEMYAD 253
S G+ FTL F+++Y D
Sbjct: 321 ASCDLGYCFTLSSFAKLYID 340
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 45.6 bits (103), Expect = 7e-06
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Frame = +2
Query: 14 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYX----------DDGGPMGXVR 163
IL +NKMDR + R+VE VN +I T+ D+ +
Sbjct: 150 ILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFYTGELMQLADNDEVISDEGIY 209
Query: 164 VDPSKGSVGFGSGLHGWAFTLKQFSEMY 247
P +G+V F S GWAF L QFSE Y
Sbjct: 210 FAPEQGNVVFASAYDGWAFCLDQFSEFY 237
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 289 LWGENFFNPXTKKWSKQKDDDNKR---SFCMYVLDPIYXXFD-AIMKFKKEEXDDLLXKI 456
LWG+ + +P TK+ + K +R F +VL+ ++ ++ A+ E + ++ +
Sbjct: 252 LWGDYYLDPKTKRVLQPKHLQGRRLKPMFVQFVLENLWAVYESAVSNRNLENIEKIIKAL 311
Query: 457 GVTIKHXD 480
+ + D
Sbjct: 312 NIKVLPRD 319
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 513 VMRSWLPXGEALLQXIAIHLPSPVVAQ 593
+ + WLP A+L +PSP+ AQ
Sbjct: 332 IFQQWLPLSTAILLTAIREIPSPINAQ 358
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 271 VKLMNRLWGENFFNPXTKKWSKQKDD 348
++L+NRL ++F +P T KW K D
Sbjct: 639 LRLVNRLDVDSFLHPKTPKWVFNKQD 664
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = -2
Query: 229 FEGESPPMKTRPETNRALARVDXXXXXXXXXIVICGYNDVNIFYNTLERLV*FFSFKLEL 50
FE S M+ RPETN + + VIC N+ Y + + L+L
Sbjct: 170 FELGSLSMEMRPETNNVVGYENPSDPELVSSCVICSIRLANLVYIDRRQSSQQITDYLDL 229
Query: 49 KKSTVHFVHEQNRP 8
T + + + N P
Sbjct: 230 SLQTYYSLDKSNVP 243
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 298 ENFFNPXTKKWSKQKDDDNKRS 363
E+ N +KWSK +DDD S
Sbjct: 432 ESILNKINQKWSKVQDDDGMPS 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,105
Number of Sequences: 5004
Number of extensions: 45189
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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