Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060115.seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 92 3e-19
04_01_0103 + 1082077-1082167,1083037-1085477 92 4e-19
02_04_0017 + 18937774-18937864,18938505-18940945 92 4e-19
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 81 8e-16
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 60 2e-09
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 49 3e-06
03_05_0511 + 25056018-25059107 36 0.031
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/81 (53%), Positives = 54/81 (66%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
RP+L +NKMDR YQTF R++EN NVI+ATY D +G V+V P KG+V
Sbjct: 152 RPVLTVNKMDRCFLELQVGGEEAYQTFSRVIENANVIMATYED--ALLGDVQVYPEKGTV 209
Query: 188 GFGSGLHGWAFTLKQFSEMYA 250
F +GLHGWAFTL F++MYA
Sbjct: 210 AFSAGLHGWAFTLSNFAKMYA 230
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWS-KQKDDDN-KRSFCMYVLDPIYXXFDAIMKFKK 426
+F +D K+M RLWGEN+F+P TKKW+ K D KR F + +PI + M +K
Sbjct: 232 KFGVDESKMMERLWGENYFDPTTKKWTIKHTGSDTCKRGFIQFCYEPIRQIINTCMNDQK 291
Query: 427 EEXDDLLXKIGVTIK 471
++ +L K+GVT+K
Sbjct: 292 DKLLPMLQKLGVTMK 306
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 513 VMRSWLPXGEALLQXIAIHLPSPVVAQQ 596
VM++WLP ALL+ + HLPSP AQ+
Sbjct: 317 VMQTWLPASNALLEMMIYHLPSPAKAQR 344
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 91.9 bits (218), Expect = 4e-19
Identities = 43/81 (53%), Positives = 54/81 (66%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
RP+L +NKMDR YQTF R++EN NVI+ATY D +G V+V P KG+V
Sbjct: 152 RPVLTVNKMDRCFLELQVEGEEAYQTFSRVIENANVIMATYEDT--LLGDVQVYPEKGTV 209
Query: 188 GFGSGLHGWAFTLKQFSEMYA 250
F +GLHGWAFTL F++MYA
Sbjct: 210 AFSAGLHGWAFTLSSFAKMYA 230
Score = 66.1 bits (154), Expect = 3e-11
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDN--KRSFCMYVLDPIYXXFDAIMKFKK 426
+F +D K+M RLWGENFF+P TKKW+ + KR F + +PI + M +K
Sbjct: 232 KFGVDESKMMERLWGENFFDPATKKWTNKSTGSATCKRGFVQFCYEPIKQIINTCMNDQK 291
Query: 427 EEXDDLLXKIGVTIKHXDXXKDGKXXXXXXXXXXXXXVKXCFX*LPFIYHHL*WPS---K 597
++ +L K+GV +K + GK L + +HL PS K
Sbjct: 292 DKLWPMLQKLGVVMKADEKDLMGKALMKRVMQTWLPASNAL---LEMMIYHLPSPSKAQK 348
Query: 598 YRMEMLXRXXPIDG*SCPLGXXXCXXEGP 684
YR+E L P+D C EGP
Sbjct: 349 YRVENLYE-GPLDD-VYATAIRNCDPEGP 375
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 91.9 bits (218), Expect = 4e-19
Identities = 43/81 (53%), Positives = 54/81 (66%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
RP+L +NKMDR YQTF R++EN NVI+ATY D +G V+V P KG+V
Sbjct: 152 RPVLTVNKMDRCFLELQVEGEEAYQTFSRVIENANVIMATYEDT--LLGDVQVYPEKGTV 209
Query: 188 GFGSGLHGWAFTLKQFSEMYA 250
F +GLHGWAFTL F++MYA
Sbjct: 210 AFSAGLHGWAFTLSSFAKMYA 230
Score = 66.5 bits (155), Expect = 2e-11
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDN--KRSFCMYVLDPIYXXFDAIMKFKK 426
+F +D K+M RLWGENFF+P TKKW+ + KR F + +PI + M +K
Sbjct: 232 KFGVDEFKMMERLWGENFFDPATKKWTNKNTGSATCKRGFVQFCYEPIKQIINTCMNDQK 291
Query: 427 EEXDDLLXKIGVTIKHXDXXKDGKXXXXXXXXXXXXXVKXCFX*LPFIYHHL*WPSK--- 597
++ +L K+GV +K + GK L + +HL PSK
Sbjct: 292 DKLWPMLQKLGVVMKADEKELMGKALMKRVMQTWLPASNAL---LEMMIYHLPSPSKAQR 348
Query: 598 YRMEMLXRXXPIDG*SCPLGXXXCXXEGP 684
YR+E L P+D C EGP
Sbjct: 349 YRVENLYE-GPLDD-VYATAIRNCDPEGP 375
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/80 (46%), Positives = 49/80 (61%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
+P+L +NKMDR YQ F R++E+VNV +A Y D +G V P KG+V
Sbjct: 152 KPVLTVNKMDRCFLELQQSGEEAYQAFSRVIESVNVTMAPYEDKN--LGDCMVAPEKGTV 209
Query: 188 GFGSGLHGWAFTLKQFSEMY 247
F +GLHGWAFTL F++MY
Sbjct: 210 AFSAGLHGWAFTLSNFAKMY 229
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDN----KRSFCMYVLDPIYXXFDAIMKF 420
+FK+D K+M RLWGEN+F+ TKKW+ + +R F + +PI A M
Sbjct: 232 KFKVDEAKMMERLWGENYFDHTTKKWTTTAPSTSSKTCQRGFVQFCYEPIRRIISACMND 291
Query: 421 KKEEXDDLLXKIGVTIKHXDXXKDGK 498
KE D+L K+ +T+K + GK
Sbjct: 292 DKENLWDMLTKLKITLKAEEKELTGK 317
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 513 VMRSWLPXGEALLQXIAIHLPSPVVAQQ 596
VM++WLP +ALL+ I HLPSP AQQ
Sbjct: 323 VMQAWLPASDALLEMIVFHLPSPAKAQQ 350
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/91 (30%), Positives = 50/91 (54%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
+P+ +NK+DR YQT ++++VN ++++ D +V P+KG+V
Sbjct: 338 QPVFTLNKIDRFFLEQNVDGEKAYQTLSSLIDSVNATMSSHKD-------AQVYPTKGTV 390
Query: 188 GFGSGLHGWAFTLKQFSEMYADNSRLTLSSL 280
F SGLHGWA + F++MY+ ++ S +
Sbjct: 391 VFSSGLHGWAVAISNFAKMYSSKFKVEESKM 421
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDN--KRSFCMYVLDPIYXXFDAIMKFKK 426
+FK++ K+++RLWGENFF+ TKKW+K+ KR F + +PI +A M K
Sbjct: 413 KFKVEESKMIDRLWGENFFDLATKKWTKKNTGTATCKRGFVQFCYEPIREIMNACMN-SK 471
Query: 427 EEXDDLLXKIGVTI 468
+ +L KI VT+
Sbjct: 472 HKLWPMLEKIHVTV 485
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 513 VMRSWLPXGEALLQXIAIHLPSPVVAQQISYGD 611
V+++WLP AL + + H+PSP AQ+ G+
Sbjct: 501 VIQAWLPACSALSEMMMYHIPSPEKAQRHCVGN 533
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 259 KIDLVKLMNRLWGENFFNPXTKKWSKQKDDDN-KRSFCMYVLDPIYXXFDAIMKFKKEEX 435
+ D K +RLWG+ +++P T+ + K+ + RSF +VL+P+Y + ++ K +
Sbjct: 357 QFDHEKFASRLWGDLYYHPDTRTFKKKPPKEGANRSFVEFVLEPLYKIYSQVVGESKGKV 416
Query: 436 DDLLXKIGVTIKH 474
+ L ++GVT+ +
Sbjct: 417 EATLSELGVTLSN 429
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +2
Query: 14 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSVGF 193
++ +NK+DR Y + +E +N +I++ G G VDP+ G+V F
Sbjct: 275 VVVINKVDRLITELKLPPNDAYFKLRHTLEAINDLISSCSTTVG--GTQLVDPAAGNVCF 332
Query: 194 GSGLHGWAFTLKQFSEMY 247
SG GW+FTL+ F+ +Y
Sbjct: 333 ASGSAGWSFTLQSFAHLY 350
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 170 PSKGSVGFGSGLHGWAFTLKQFSEMYA 250
P KG+V F L GW F + QF+E YA
Sbjct: 210 PQKGNVVFACALDGWGFRIHQFAEFYA 236
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 507 EVVMRSWLPXGEALLQXIAIHLPSPVVAQQI 599
+ VM WLP +A++ + P PV AQ +
Sbjct: 328 QAVMSRWLPLADAVMTMVVECTPDPVAAQGV 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,028,787
Number of Sequences: 37544
Number of extensions: 316563
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -