Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060115.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   116   2e-26
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              35   0.055
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  116 bits (278), Expect = 2e-26
 Identities = 52/91 (57%), Positives = 65/91 (71%)
 Frame = +2

Query: 8   RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
           +P+LFMNKMDR            YQTF RIVE++NVIIATY D+ GPMG ++V P KG+V
Sbjct: 153 KPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIATYSDEDGPMGNIQVGPEKGTV 212

Query: 188 GFGSGLHGWAFTLKQFSEMYADNSRLTLSSL 280
            FGSGLHGWAFTLKQ SE+Y+   ++  + L
Sbjct: 213 AFGSGLHGWAFTLKQISEIYSAKFKIPPAKL 243



 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 38/82 (46%), Positives = 50/82 (60%)
 Frame = +1

Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDNKRSFCMYVLDPIYXXFDAIMKFKKEE 432
           +FKI   KLM RLWG+ F N   KKW K++   N R F  +VLDPI+  FDAIM FKKE 
Sbjct: 235 KFKIPPAKLMKRLWGDQFINAEDKKWKKEQATGNVRGFNQFVLDPIFKMFDAIMNFKKEA 294

Query: 433 XDDLLXKIGVTIKHXDXXKDGK 498
             +LL K+ + +   +   +GK
Sbjct: 295 TANLLEKLKIKLTVEERELEGK 316



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 507 EVVMRSWLPXGEALLQXIAIHLPSPVVAQQ 596
           + VMR WLP GEA+LQ IAIHLPSPVV+Q+
Sbjct: 320 KTVMRKWLPAGEAMLQMIAIHLPSPVVSQK 349


>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDNKRSFCMYVLDPIY 393
           +FKI   KLM RLWG+ F N   KKW K++   N R F  +VLDPI+
Sbjct: 62  KFKIPPAKLMKRLWGDQFINAEDKKWKKEQATGNVRGFNQFVLDPIF 108



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
 Frame = +2

Query: 107 VNVIIATYXDDGGPM---GXVRVD-PSKGSVGFGSGLHGWAFTLKQFSEMYADNSRLTLS 274
           ++  I T    G P+   G  ++D P KG+V FGSGLHGWAFTLKQ SE+Y+   ++  +
Sbjct: 9   ISANIGTKAGTGPPLEVDGIDKLDGPEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPA 68

Query: 275 SL 280
            L
Sbjct: 69  KL 70


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 262 IDLVKLMNRLWGENFFNPXTKKWSKQKD-DDNKRSFCMYVLDPIYXXFDAI 411
           ID      RLWG+ +F+  T+K++++     ++RSF  ++L+P+Y  F  +
Sbjct: 267 IDPQDFAQRLWGDMYFSSKTRKFTRKAPLSTSQRSFVEFILEPMYKIFGQV 317



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 18/78 (23%), Positives = 38/78 (48%)
 Frame = +2

Query: 23  MNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSVGFGSG 202
           +NK+DR            Y   + +++ VN +++ + +    +    + P  G+V F S 
Sbjct: 188 INKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSEGADDLV---ISPLLGNVCFASS 244

Query: 203 LHGWAFTLKQFSEMYADN 256
            + + FTL  F+++Y D+
Sbjct: 245 SYHFCFTLLSFAKLYVDS 262


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
 Frame = +1

Query: 277 LMNRLWGENFFNPXTKKWSKQKDDDNKRS-FCMYVLDPIYXXFDAIM----KFKKEEXDD 441
           L   LWG+ + +  TK+  K+    NK+  F  ++LD I+  +DA++    K K E+  +
Sbjct: 253 LQKTLWGDFYLDSKTKRIFKKAQLKNKKPLFVQFILDNIWALYDAVVIRRDKVKSEQISN 312

Query: 442 LLXKIGVTIK 471
            L K+ ++++
Sbjct: 313 SL-KLKISVR 321



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 8   RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 127
           RP L +NK+DR            +   Q+I+E VN I  T
Sbjct: 131 RPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 261 LELSAYISENCLRVKAHP*RPDPKPTEPLLGSTRTSPMGPPSS 133
           L+    +  N   V+    +P PK T P+ G+ +  PMGPP S
Sbjct: 622 LDAQRLLPSNSQNVEDSWRKPRPKSTPPM-GAVQVLPMGPPPS 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,225,732
Number of Sequences: 59808
Number of extensions: 361713
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)