Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060115.seq
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 126 1e-29
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 126 1e-29
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 41 0.001
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 41 0.001
U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical pr... 27 9.7
U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical p... 27 9.7
AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 126 bits (305), Expect = 1e-29
Identities = 57/81 (70%), Positives = 64/81 (79%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
+P+LFMNKMDR +QTFQRIVEN+NVIIATY DD GPMG + VDPS G+V
Sbjct: 164 KPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGPMGPIMVDPSIGNV 223
Query: 188 GFGSGLHGWAFTLKQFSEMYA 250
GFGSGLHGWAFTLKQF+EMYA
Sbjct: 224 GFGSGLHGWAFTLKQFAEMYA 244
Score = 89.4 bits (212), Expect = 2e-18
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDNKRSFCMYVLDPIYXXFDAIMKFKKEE 432
+F + + KLM LWG+ FF+ TKKWS + D++KR FC +VLDPI+ FDA+M KK++
Sbjct: 246 KFGVQVDKLMKNLWGDRFFDLKTKKWSSTQTDESKRGFCQFVLDPIFMVFDAVMNIKKDK 305
Query: 433 XDDLLXKIGVTIKHXDXXKDGKXXXXXXXXXXXXXVKXCFX*LPFIYHHL*WP---SKYR 603
L+ K+G+ + + + +GK L I HL P KYR
Sbjct: 306 TAALVEKLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTM---LQMIAFHLPSPVTAQKYR 362
Query: 604 MEMLXRXXPIDG*SCPLGXXXCXXEGP 684
MEML D + C GP
Sbjct: 363 MEMLYEGPHDD--EAAVAIKTCDPNGP 387
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 126 bits (305), Expect = 1e-29
Identities = 57/81 (70%), Positives = 64/81 (79%)
Frame = +2
Query: 8 RPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYXDDGGPMGXVRVDPSKGSV 187
+P+LFMNKMDR +QTFQRIVEN+NVIIATY DD GPMG + VDPS G+V
Sbjct: 164 KPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGPMGPIMVDPSIGNV 223
Query: 188 GFGSGLHGWAFTLKQFSEMYA 250
GFGSGLHGWAFTLKQF+EMYA
Sbjct: 224 GFGSGLHGWAFTLKQFAEMYA 244
Score = 89.4 bits (212), Expect = 2e-18
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Frame = +1
Query: 253 QFKIDLVKLMNRLWGENFFNPXTKKWSKQKDDDNKRSFCMYVLDPIYXXFDAIMKFKKEE 432
+F + + KLM LWG+ FF+ TKKWS + D++KR FC +VLDPI+ FDA+M KK++
Sbjct: 246 KFGVQVDKLMKNLWGDRFFDLKTKKWSSTQTDESKRGFCQFVLDPIFMVFDAVMNIKKDK 305
Query: 433 XDDLLXKIGVTIKHXDXXKDGKXXXXXXXXXXXXXVKXCFX*LPFIYHHL*WP---SKYR 603
L+ K+G+ + + + +GK L I HL P KYR
Sbjct: 306 TAALVEKLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTM---LQMIAFHLPSPVTAQKYR 362
Query: 604 MEMLXRXXPIDG*SCPLGXXXCXXEGP 684
MEML D + C GP
Sbjct: 363 MEMLYEGPHDD--EAAVAIKTCDPNGP 387
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Frame = +2
Query: 2 GTRPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA-----------TYXDDGGP 148
G IL +NK+DR YQ R++E VN I+ T+ +
Sbjct: 135 GQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQVLGGIVLEDDTWGNIEES 194
Query: 149 MGXVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADNSRLTLSSL 280
+ DP+KG+V F S LH +AF + F+++ A+ ++ S+L
Sbjct: 195 EAKLHFDPAKGNVIFSSALHSYAFGCEDFAQIAAEKMKVEKSAL 238
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Frame = +2
Query: 2 GTRPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA-----------TYXDDGGP 148
G IL +NK+DR YQ R++E VN I+ T+ +
Sbjct: 135 GQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQVLGGIVLEDDTWGNIEES 194
Query: 149 MGXVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADNSRLTLSSL 280
+ DP+KG+V F S LH +AF + F+++ A+ ++ S+L
Sbjct: 195 EAKLHFDPAKGNVIFSSALHSYAFGCEDFAQIAAEKMKVEKSAL 238
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 286 RLWGENFFNPXTKKWSKQKDD-DNKRSFCMYVLDPIYXXFDAIMKFKKEEXDDLLXKIGV 462
RLWG+ +F T+K+ K+ D R+F ++L+P+Y F ++ D++ ++G+
Sbjct: 346 RLWGDIYFEKKTRKFVKKSPSHDAPRTFVQFILEPMYKIFSQVVGDVDTCLPDVMAELGI 405
Query: 463 TI 468
+
Sbjct: 406 RL 407
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 286 RLWGENFFNPXTKKWSKQKDD-DNKRSFCMYVLDPIYXXFDAIMKFKKEEXDDLLXKIGV 462
RLWG+ +F T+K+ K+ D R+F ++L+P+Y F ++ D++ ++G+
Sbjct: 221 RLWGDIYFEKKTRKFVKKSPSHDAPRTFVQFILEPMYKIFSQVVGDVDTCLPDVMAELGI 280
Query: 463 TI 468
+
Sbjct: 281 RL 282
>U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical
protein K08F11.2 protein.
Length = 886
Score = 27.5 bits (58), Expect = 9.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +1
Query: 292 WGENFFNPXTKKWSKQKDDDNKRS 363
W N N ++W K ++D+N +
Sbjct: 10 WSSNLLNARKRRWKKDEEDENSNT 33
>U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical
protein K08D10.1 protein.
Length = 895
Score = 27.5 bits (58), Expect = 9.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +1
Query: 292 WGENFFNPXTKKWSKQKDDDNKRS 363
W N N ++W K ++D+N +
Sbjct: 10 WSSNLLNARKRRWKKDEEDENSNT 33
>AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical
protein Y20F4.5 protein.
Length = 725
Score = 27.5 bits (58), Expect = 9.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +1
Query: 292 WGENFFNPXTKKWSKQKDDDNKRS 363
W N N ++W K ++D+N +
Sbjct: 10 WSSNLLNARKRRWKKDEEDENSNT 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,735
Number of Sequences: 27780
Number of extensions: 265969
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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