Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060114.seq
(644 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 95 2e-18
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 46 8e-04
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 46 0.001
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 45 0.002
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 44 0.003
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 40 0.051
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 40 0.068
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 38 0.16
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 36 0.63
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 36 0.63
UniRef50_A6PS51 Cluster: Putative uncharacterized protein precur... 33 4.5
UniRef50_Q2UBZ7 Cluster: Predicted protein; n=1; Aspergillus ory... 33 7.8
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 94.7 bits (225), Expect = 2e-18
Identities = 44/45 (97%), Positives = 45/45 (100%)
Frame = +1
Query: 328 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 462
FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL+
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 87.0 bits (206), Expect = 3e-16
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 510 MAFTNLVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPYQ 632
MAFTNLVDTLANTIHRDAITAPLV+TAISNFRHKLQLYPYQ
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ 41
Score = 85.0 bits (201), Expect = 1e-15
Identities = 39/41 (95%), Positives = 41/41 (100%)
Frame = +2
Query: 134 MAFTNLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPYR 256
MAFTNLV+TLANTIHRDAITAPLVETAISNFRHKLQLYPY+
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ 41
Score = 66.5 bits (155), Expect = 5e-10
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1
Query: 10 RDAITAPLVETAISNFRH*LQLYPYQVNSKLM*NLNPL 123
RDAITAPLVETAISNFRH LQLYPYQVNSKL+ LN L
Sbjct: 16 RDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQL 53
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 46.0 bits (104), Expect = 8e-04
Identities = 18/45 (40%), Positives = 33/45 (73%)
Frame = +1
Query: 328 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 462
F +D L++T HRD+I+APL+++++S + L+L+PY V +L+
Sbjct: 3 FQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = +3
Query: 510 MAFTNLVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
MAF +D L++T HRD+I+APL+ +++S + L+L+PY
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPY 40
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = +2
Query: 134 MAFTNLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPY 253
MAF ++ L++T HRD+I+APL+++++S + L+L+PY
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPY 40
Score = 37.9 bits (84), Expect = 0.21
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +1
Query: 4 TSRDAITAPLVETAISNFRH*LQLYPYQVNSKLM*NLN 117
T RD+I+APL+++++S + L+L+PY V +L+ LN
Sbjct: 14 THRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLN 51
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 134 MAFTNLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPY 253
MAF + N L++T+HRD + APL+E+ R L+LYP+
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPW 40
Score = 44.0 bits (99), Expect = 0.003
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 328 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 456
F + + L++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 3 FQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 41.9 bits (94), Expect = 0.013
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 510 MAFTNLVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
MAF + + L++T+HRD + APL+++ R L+LYP+
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPW 40
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 337 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 447
LV+ L T+HRD + +PLVE A R LQLYPY +
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 44.0 bits (99), Expect = 0.003
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 119 PYSSSMAFTNLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPY 253
P S LV L T+HRD + +PLVE A R LQLYPY
Sbjct: 127 PALSGGGLKELVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPY 171
Score = 41.9 bits (94), Expect = 0.013
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 525 LVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
LV+ L T+HRD + +PLV+ A R LQLYPY
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPY 171
Score = 33.1 bits (72), Expect = 5.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 10 RDAITAPLVETAISNFRH*LQLYPYQV 90
RD + +PLVE A R LQLYPY +
Sbjct: 147 RDTVCSPLVEAAAGPLRDSLQLYPYDI 173
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +1
Query: 334 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 447
++++TL++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
Score = 43.2 bits (97), Expect = 0.006
Identities = 19/42 (45%), Positives = 31/42 (73%)
Frame = +2
Query: 146 NLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPYR*IPSS 271
+++ TL++TIHRD I APL+ET S +R L+ +P+ +P+S
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWA-VPAS 66
Score = 41.1 bits (92), Expect = 0.022
Identities = 16/36 (44%), Positives = 28/36 (77%)
Frame = +3
Query: 522 NLVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
++++TL++TIHRD I APL++T S +R L+ +P+
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPW 61
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 39.9 bits (89), Expect = 0.051
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 340 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 447
V++L T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
Score = 39.1 bits (87), Expect = 0.090
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 152 VNTLANTIHRDAITAPLVETAISNFRHKLQLYPYR*IPSS*H 277
V +L T HRD ITAP+VE+ + R L+ YP+ IP H
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWS-IPKEFH 54
Score = 37.1 bits (82), Expect = 0.36
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 528 VDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
V++L T HRD ITAP+V++ + R L+ YP+
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPW 47
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 39.5 bits (88), Expect = 0.068
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 510 MAFTNLVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
MAF + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
Score = 38.7 bits (86), Expect = 0.12
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 134 MAFTNLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPY 253
MAF + + L +T HRDA T P++ + + R L LYP+
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
Score = 35.9 bits (79), Expect = 0.84
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 328 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 441
F + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 3 FQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 38.3 bits (85), Expect = 0.16
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 328 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 462
F +D LA T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
Score = 37.1 bits (82), Expect = 0.36
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 510 MAFTNLVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
MAF +D LA T HRD P++++ + + R +Q YP+
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPW 40
Score = 36.7 bits (81), Expect = 0.48
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 134 MAFTNLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPY 253
MAF ++ LA T HRD P++E+ + + R +Q YP+
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPW 40
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 36.3 bits (80), Expect = 0.63
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +2
Query: 158 TLANTIHRDAITAPLVETAISNFRHKLQLYPYR*IPSS*HKQPTKSAC 301
+LA T HRD I PL+E +R L YP+ IP+ + QP ++C
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWH-IPT--NLQPFLTSC 141
Score = 36.3 bits (80), Expect = 0.63
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 346 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 459
+LA T HRD I PL+E +R L YP+ + + L
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 36.3 bits (80), Expect = 0.63
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 510 MAFTNLVDTLANTIHRDAITAPLVKTAISNFRHKLQLYPY 629
MAF + ++ L +T HRDA++ P++ + + + L+ YP+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
Score = 35.5 bits (78), Expect = 1.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 134 MAFTNLVNTLANTIHRDAITAPLVETAISNFRHKLQLYPY 253
MAF + + L +T HRDA++ P++ + + + L+ YP+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
Score = 32.7 bits (71), Expect = 7.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 328 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 441
F + ++ L +T HRDA++ P++ + + + L+ YP+
Sbjct: 3 FQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
>UniRef50_A6PS51 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 581
Score = 33.5 bits (73), Expect = 4.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 591 WRFSLGEPLWRLGGWC 544
W F+LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
Score = 32.7 bits (71), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 403 WRFPLGEPLWRLGGWC 356
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
Score = 32.7 bits (71), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 215 WRFPLGEPLWRLGGWC 168
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
>UniRef50_Q2UBZ7 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 110
Score = 32.7 bits (71), Expect = 7.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 546 CWRECRLNW*KPCKRRSQGQADFVGCLC 463
CWR+ ++ W P +R+ +G F GCLC
Sbjct: 84 CWRDSQIRWFLPDRRQLRGNCYF-GCLC 110
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,664,015
Number of Sequences: 1657284
Number of extensions: 10711128
Number of successful extensions: 24376
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24372
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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