Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060114.seq
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   3.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   3.8  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 378 NGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYMAFTNLVDTLANT 548
           + SPSG+  Q   S AST P +  +      +   Q         A  ++V + ++T
Sbjct: 37  SSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSST 93



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 190 NGSPSGNRHQQFPSQASTLP 249
           + SPSG+  Q   S AST P
Sbjct: 37  SSSPSGSSPQHSSSSASTSP 56



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 21 NGSPSGNRHQQFPSLASTLP 80
          + SPSG+  Q   S AST P
Sbjct: 37 SSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 378 NGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYMAFTNLVDTLANT 548
           + SPSG+  Q   S AST P +  +      +   Q         A  ++V + ++T
Sbjct: 37  SSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSST 93



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 190 NGSPSGNRHQQFPSQASTLP 249
           + SPSG+  Q   S AST P
Sbjct: 37  SSSPSGSSPQHSSSSASTSP 56



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 21 NGSPSGNRHQQFPSLASTLP 80
          + SPSG+  Q   S AST P
Sbjct: 37 SSSPSGSSPQHSSSSASTSP 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,083
Number of Sequences: 336
Number of extensions: 2730
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)