Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060114.seq
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   7.1  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.3  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +2

Query: 44  PSAISVTSFNFTHIR*IPSSCKILIP-------YSSSMAFTNLVNTLANTIHRDAITAPL 202
           PS +S ++ NF     IP S   L+P       Y+ +     L +    T+ RD   APL
Sbjct: 349 PSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYNGNYYLQQLPSASPPTMFRDHSFAPL 408

Query: 203 VETAI 217
           V  +I
Sbjct: 409 VSPSI 413


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 341 TKLVKAMLSAEARDKLTLLVVY 276
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 59  VTSFNFTHIR*IPSSCKILIPYSSSMAFTNLV 154
           +TSF+F H++ I  S     PY  ++ F  LV
Sbjct: 67  MTSFDFDHVQQILLSAVQPYPYDKNLMFVYLV 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,695
Number of Sequences: 5004
Number of extensions: 42145
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)