Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060114.seq
         (644 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   2.7  
AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    24   3.6  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    23   8.3  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 50   AISVTSFNFTHIR*IPSSCKILIPYSSSMAFTNLVNTLANTIHRDAITAPLVETA 214
            ++ + +F   H++    S  I+  YS       L   LAN +HR+A ++  ++ A
Sbjct: 1073 SMPIQAFEMIHLKTYQGS--IIQKYSRLSCILELDTMLANHLHREAFSSSELQKA 1125



 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 429  TLPISGKFQAHDINNQQSQLVPGFCAYMAFTNLVDTLANTIHRDAITAPLVKTA 590
            ++PI   F+   +   Q  ++  +        L   LAN +HR+A ++  ++ A
Sbjct: 1073 SMPIQA-FEMIHLKTYQGSIIQKYSRLSCILELDTMLANHLHREAFSSSELQKA 1125


>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 414 PSQASTLPISGKFQAHDINNQQSQLVPG 497
           P  AST P  G FQ+   NN  S ++PG
Sbjct: 10  PGAASTTPSPGAFQSLARNN--SYVIPG 35


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +3

Query: 387 PSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP 494
           P     QQ+ S     P+  K + HD      +L P
Sbjct: 318 PQQQHQQQYHSHPHHTPVQFKTELHDNTQYDEELSP 353


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,255
Number of Sequences: 2352
Number of extensions: 10077
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)