BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060114.seq (644 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g67035.1 68414.m07623 expressed protein ; expression supporte... 29 2.6 At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma... 29 3.5 At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 29 3.5 At1g67500.1 68414.m07688 DNA polymerase family B protein similar... 29 3.5 >At1g67035.1 68414.m07623 expressed protein ; expression supported by MPSS Length = 229 Score = 29.1 bits (62), Expect = 2.6 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -3 Query: 75 KLKLVTEIADGGFH*GSRYGVSAR 4 KLKL+ + D GF GSRYG AR Sbjct: 26 KLKLLVDNGDYGFERGSRYGEYAR 49 >At5g26570.1 68418.m03152 glycoside hydrolase starch-binding domain-containing protein similar to SEX1 (starch excess) [Arabidopsis thaliana] GI:12044358; contains Pfam profile PF00686: Starch binding domain Length = 1191 Score = 28.7 bits (61), Expect = 3.5 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = -3 Query: 177 WMVLARVLTKLVKAMLEE*GIKILHELGIYLIWVKLKLVTEIADGGFH*GSRYGVSAR 4 W L V +V ++ E +K L IYL W+ + DGG H +R+ +R Sbjct: 263 WRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCFEDGGHHRPNRHAEISR 320 >At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC) identical to SP|Q9SI64 Arginine decarboxylase 1 (EC 4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis thaliana} Length = 702 Score = 28.7 bits (61), Expect = 3.5 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -3 Query: 633 PDMGKVEACDGNC*WRFSLGEPLWRLGGW 547 P DG+C W SL L+R+ GW Sbjct: 20 PSSVSTAVVDGSCHWSPSLSSSLYRIDGW 48 >At1g67500.1 68414.m07688 DNA polymerase family B protein similar to SP|Q61493 DNA polymerase zeta catalytic subunit (EC 2.7.7.7) {Mus musculus}; contains Pfam profile PF00136: DNA polymerase family B Length = 1890 Score = 28.7 bits (61), Expect = 3.5 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +3 Query: 384 SPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYMAFTNLVDTL 539 S S +RHQ + S + G + DI NQQ ++ + TN+V +L Sbjct: 261 SQSQHRHQHHYRRQSLCELEGDATSSDILNQQFKMYNSLSQAQSDTNMVQSL 312 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,709,074 Number of Sequences: 28952 Number of extensions: 239888 Number of successful extensions: 565 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 565 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1334473344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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