Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060113.seq
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DXK1 Cluster: Chromosome undetermined scaffold_69, wh...    37   0.49 
UniRef50_Q7SYL0 Cluster: Programmed cell death 4a; n=2; Danio re...    36   0.65 
UniRef50_Q9VY91 Cluster: CG10990-PA; n=6; Endopterygota|Rep: CG1...    36   0.86 
UniRef50_Q4SFD9 Cluster: Chromosome 2 SCAF14604, whole genome sh...    33   6.0  
UniRef50_Q4RJC7 Cluster: Chromosome 18 SCAF15038, whole genome s...    33   6.0  
UniRef50_Q18AN9 Cluster: ATP-dependent nuclease subunit A; n=3; ...    33   8.0  

>UniRef50_A0DXK1 Cluster: Chromosome undetermined scaffold_69, whole
           genome shotgun sequence; n=5; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_69,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 753

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
 Frame = +1

Query: 13  DSLFITQKKTIHHTKVFIERYNRVHSFCLTV---LKSIFHKINRTVAAMEVDRIASDSEN 183
           D+L++  +  + +T    ER  RVH+FC+ +   +K+I+ +I+++  A+ + +IA    N
Sbjct: 454 DNLYL--QTALLYTSTKGERRIRVHNFCIPISNSIKTIYSQIDQSCLAISLYKIALSQLN 511

Query: 184 VAMDEKPVVE 213
           +A D K  ++
Sbjct: 512 IARDVKDCIQ 521


>UniRef50_Q7SYL0 Cluster: Programmed cell death 4a; n=2; Danio
           rerio|Rep: Programmed cell death 4a - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 467

 Score = 36.3 bits (80), Expect = 0.65
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 258 RXNKKYARSNSKDGPSAVTP-LPKYRSWKNSRRPRNGHGRGLPKKG 392
           R + + + S+S  G  +  P  PK ++  N R+ R G GRGLPKKG
Sbjct: 71  RDSTRESLSDSVSGELSADPHSPKGKNAVNDRKSRTGKGRGLPKKG 116


>UniRef50_Q9VY91 Cluster: CG10990-PA; n=6; Endopterygota|Rep:
           CG10990-PA - Drosophila melanogaster (Fruit fly)
          Length = 509

 Score = 35.9 bits (79), Expect = 0.86
 Identities = 16/23 (69%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 327 YRSWKNSRRPRN-GHGRGLPKKG 392
           +R WKNSRR R    GRGLPKKG
Sbjct: 124 HRRWKNSRRSRTINRGRGLPKKG 146


>UniRef50_Q4SFD9 Cluster: Chromosome 2 SCAF14604, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 2 SCAF14604, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 670

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 243 SRAIRRXNKKYARSNSKDGPSAVTPLPKYRSWKNSRRPRNGHGRG 377
           SR  R      +RS+++ GPSA   LP  RS  + R+PR    RG
Sbjct: 356 SRKARWGLSSRSRSDTQPGPSACVSLPGRRSCVSVRQPRRSRWRG 400


>UniRef50_Q4RJC7 Cluster: Chromosome 18 SCAF15038, whole genome
           shotgun sequence; n=3; Deuterostomia|Rep: Chromosome 18
           SCAF15038, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 426

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 321 PKYRSWKNSRRPRNGHGRGLPKKG 392
           PK +   N R+ R G GRGLPKKG
Sbjct: 52  PKGKVTTNDRKSRTGKGRGLPKKG 75


>UniRef50_Q18AN9 Cluster: ATP-dependent nuclease subunit A; n=3;
           Clostridium difficile|Rep: ATP-dependent nuclease
           subunit A - Clostridium difficile (strain 630)
          Length = 1275

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 82  VHSFCLTVLKSIFHKIN 132
           +HSFCL V+KS FH+IN
Sbjct: 104 IHSFCLDVIKSNFHRIN 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,604,482
Number of Sequences: 1657284
Number of extensions: 12309586
Number of successful extensions: 32341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32318
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)