Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060113.seq
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    31   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.6  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.6  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 11/44 (25%), Positives = 28/44 (63%)
 Frame = +1

Query: 25  ITQKKTIHHTKVFIERYNRVHSFCLTVLKSIFHKINRTVAAMEV 156
           +++ +T+HH K+  +  +R+ +F + +L+ I H   + + +ME+
Sbjct: 435 VSRIRTLHHVKLHPDNKSRLENFSVILLQHILHLTRQPMISMEL 478


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 227 SPAPCSTTGFSSIATFSESEAMRSTSIAATVRFIL 123
           S A CS  GF+++ T +E+   +S + A    F+L
Sbjct: 239 SSAKCSVPGFNALGTIAETVLSKSLNSARMATFLL 273


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 103 VLKSIFHKINRTVAAMEVDRIASDSENVAMDEKPVVEQGAGD 228
           +L SI H  NR +++ ++D      EN+ +  K + E+G  D
Sbjct: 693 MLVSIRHLENRLMSSAKLDLEYDFRENLILYAKKIAEEGMKD 734


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/67 (19%), Positives = 30/67 (44%)
 Frame = +1

Query: 61  FIERYNRVHSFCLTVLKSIFHKINRTVAAMEVDRIASDSENVAMDEKPVVEQGAGDAATS 240
           +++ YN    FC   L      I  TV    +     D+E+  +++   + Q  G++ ++
Sbjct: 52  YVKNYNGFSFFCWVFLNLGVIGIIITVIIYYISIPKPDAESEFLNKPDSLNQNVGESQSN 111

Query: 241 NPERFVA 261
            P ++ +
Sbjct: 112 EPPKYTS 118


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 281  TSVFLVXATNRSGLDVAASPAPCSTTGFSSIATFSESEAMRSTSIAAT 138
            +S   V  T  S +  AAS A  S+   S  +T + S    S+S AAT
Sbjct: 1099 SSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAAT 1146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,489
Number of Sequences: 5004
Number of extensions: 49477
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)