Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060113.seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843     29   3.3  
12_01_0799 + 7329394-7330125                                           28   5.7  
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773...    28   5.7  
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258...    28   5.7  
06_01_0465 - 3304417-3306834                                           28   7.5  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    27   9.9  
06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840     27   9.9  
01_06_0914 - 32939902-32940108                                         27   9.9  

>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
          Length = 588

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 390 LSSVTPCRGHCVVFGCSSSYDISGAAS 310
           +SS T   GH + F  SS+ D SGAA+
Sbjct: 93  MSSFTDLAGHGIAFAVSSTRDFSGAAA 119


>12_01_0799 + 7329394-7330125
          Length = 243

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 269 LVXATNRSGLDVAASPAPCSTTGFSSIA-TFSESEAMRSTSIAATVRFIL*NMDFNT 102
           L+ A   SG +VAA+P+P +  G   IA T  E +  R  +    +R +   +  NT
Sbjct: 9   LLIALVVSGSNVAATPSPSAVVGNGDIASTAQEMQRARYFTFVMLIRMVQEKIPHNT 65


>07_01_0917 +
           7735696-7735896,7735907-7736404,7736481-7736813,
           7736991-7737314,7737367-7737836,7738165-7738447,
           7738527-7738640
          Length = 740

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 158 IASLPTLKTWRWTKSRS*NRAPETLRRPIPSDSSXEQEI 274
           +A +P  +   W ++R    +  TL  PIP D +  Q+I
Sbjct: 195 LADIPVQRARNWARARVKKNSDGTLSFPIPEDQAVYQKI 233


>01_01_0321 -
           2584332-2584661,2584776-2584883,2584987-2585070,
           2585162-2585221,2585322-2585421,2585504-2585906,
           2586183-2586480,2587526-2587711
          Length = 522

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +1

Query: 55  KVFIERYNRVHSFCLTVLKSIFHKINRTVAAMEVDRIASDSENVA 189
           K+ +   N++    + +  +IFHK+N+T  A E++  ++   N++
Sbjct: 184 KICLSGPNKLSEELIRLTVNIFHKLNKTTNAAELEMSSTSKLNIS 228


>06_01_0465 - 3304417-3306834
          Length = 805

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 285 NSKDGPSAVTPLPKYRSWKNSRRPRNGHGRGLPKKGEWF*PKNRLNWLSSSY 440
           N  +  S   P P + SW N R        G+     WF   ++LN+ +S +
Sbjct: 198 NGPETSSIYWPNPAFLSWDNGRTTYYSSRHGVLDSDGWFIATDQLNFEASDH 249


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 116 MDFNTVKQKLCTRLYRSMKTF 54
           MDF TV++KL    YRS + F
Sbjct: 49  MDFGTVRRKLARNAYRSFEQF 69


>06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840
          Length = 299

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 405 PKNRLNWLSSSYYLFMXAGELSGSNAT 485
           PKNRLNWL   +Y+     EL GS+ T
Sbjct: 104 PKNRLNWL---WYINGDEPELMGSSVT 127


>01_06_0914 - 32939902-32940108
          Length = 68

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -1

Query: 296 VLAVRTSVFLVXATNRSGLDVAA-SPAPCSTTGFSSIATFSESEAMRSTSIAA 141
           ++AV  +  +V A++  G   AA +PAP  T+G  + AT + + A  + S+AA
Sbjct: 9   IVAVAVAAVVVVASSLVGTASAADAPAPAPTSG--ATATAAAAPAFAAVSVAA 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,157
Number of Sequences: 37544
Number of extensions: 357172
Number of successful extensions: 1010
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)