Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060113.seq
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL021172-1|CAA15962.1|  315|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF056579-1|AAC78601.1|  315|Caenorhabditis elegans high mobility...    28   6.7  
U23174-2|AAM97992.1|  100|Caenorhabditis elegans Inhibitor of se...    27   8.9  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   8.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   8.9  

>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
           protein F21C10.7 protein.
          Length = 2541

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 1   GTRCDSLFITQKKTIHHTKVFIERYNRVHSFCLTVLKSIFHKINRTVAAMEVDRIASDSE 180
           G R   L    ++ +H+ K  + R +R+H+F L   KS+  ++N  V  M+    A   E
Sbjct: 271 GGRISHLSGRIEEFLHYLKTRMNRSHRIHAF-LQAAKSMVSQLNMMVEDMKCANAAMAGE 329

Query: 181 NVAMDEK---PVVEQG 219
              + ++   P++ +G
Sbjct: 330 LAPLAKQKASPLIHEG 345


>AL021172-1|CAA15962.1|  315|Caenorhabditis elegans Hypothetical
           protein Y17G7A.1 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +1

Query: 94  CLTVLKSIFHKINRTVAAMEVDRIASDSENVAMDEKPVVEQGAGDAATSN 243
           C  +++   HK+N T+A + V    + +EN   +E      G+      N
Sbjct: 26  CADLIEKELHKLNATIARVPVGEFVAYAENAVKNETDSEAVGSSSVKREN 75


>AF056579-1|AAC78601.1|  315|Caenorhabditis elegans high mobility
           group protein I beta protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +1

Query: 94  CLTVLKSIFHKINRTVAAMEVDRIASDSENVAMDEKPVVEQGAGDAATSN 243
           C  +++   HK+N T+A + V    + +EN   +E      G+      N
Sbjct: 26  CADLIEKELHKLNATIARVPVGEFVAYAENAVKNETDSEAVGSSSVKREN 75


>U23174-2|AAM97992.1|  100|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 1 protein.
          Length = 100

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/66 (28%), Positives = 24/66 (36%)
 Frame = -3

Query: 408 LVKTTHLSSVTPCRGHCVVFGCSSSYDISGAASQRSARPCC*NERISCSCDESLGIGRRS 229
           +VKT     V PC  + V   CSS  +  G   Q   R C   +   C C    G  R  
Sbjct: 30  IVKTEETEEVKPCGLNEVWMVCSSCEEECGKTPQPCPRIC---QPARCQCPAHKGYRRDG 86

Query: 228 VSGALF 211
               +F
Sbjct: 87  QGNCIF 92


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 234   DVQSRAIRRXNKKYARSNSKDGPSAVTPLPKYRSWKNSRRPRNGHGRGLPKKGE 395
             D  +  +R  NKK ++   K+G S      K +  + S        + L KKGE
Sbjct: 10711 DSDAMEVRGLNKKLSKKGGKEGTSTEKSSSKTKKQEKSALSVQEMNKSLKKKGE 10764


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 234   DVQSRAIRRXNKKYARSNSKDGPSAVTPLPKYRSWKNSRRPRNGHGRGLPKKGE 395
             D  +  +R  NKK ++   K+G S      K +  + S        + L KKGE
Sbjct: 10711 DSDAMEVRGLNKKLSKKGGKEGTSTEKSSSKTKKQEKSALSVQEMNKSLKKKGE 10764


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,843
Number of Sequences: 27780
Number of extensions: 290475
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)