Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060113.seq
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11620.2 68416.m01420 expressed protein similar to unknown pr...    28   4.8  
At3g11620.1 68416.m01419 expressed protein similar to unknown pr...    28   4.8  
At1g13120.1 68414.m01521 expressed protein contains Prosite PS00...    28   4.8  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    28   6.3  
At1g61030.1 68414.m06871 expressed protein                             28   6.3  

>At3g11620.2 68416.m01420 expressed protein similar to unknown
           protein GB:AAF00672 (Arabidopsis thaliana)
          Length = 312

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 19  LFITQKKTIHHTKVFIERYNRVHSFCLTVLKS 114
           LF    K   HT + IER    H FC TV  S
Sbjct: 262 LFEEISKQAPHTSLSIEREGHTHGFCCTVAGS 293


>At3g11620.1 68416.m01419 expressed protein similar to unknown
           protein GB:AAF00672 (Arabidopsis thaliana)
          Length = 312

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 19  LFITQKKTIHHTKVFIERYNRVHSFCLTVLKS 114
           LF    K   HT + IER    H FC TV  S
Sbjct: 262 LFEEISKQAPHTSLSIEREGHTHGFCCTVAGS 293


>At1g13120.1 68414.m01521 expressed protein contains Prosite
           PS00012: Phosphopantetheine attachment site; similar to
           GLE1 (GI:3288817) {Homo sapiens}; EST gb|N37870 comes
           from this gene
          Length = 611

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 109 KSIFHKINRTVAAMEV-DRIASDSENVAMDEKPVVEQGAGDAATSNPE 249
           K +  K  R VA  EV DR A++ +    ++K V+E   G +ATSN +
Sbjct: 264 KEVERKAAREVAEKEVADRKAAEQK--LAEQKAVIESVTGSSATSNAQ 309


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +1

Query: 43  IHHTKVFIERYNRVHSFCLTVLKSIFHKINRTVAAMEVDRIASDSENVAMDEKPV 207
           +HHTK+     N  H+F   +    F  + R ++    DR ++++EN+A+ EKP+
Sbjct: 11  LHHTKLNTLFSN--HTFP-KISAPNFKPLFRPISISAKDRRSNEAENIAVVEKPL 62


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 251 RSGLDVAASPAPCSTTGFSSIATFSESEAMRS 156
           + G     S   CSTTGFSSI + S S+  +S
Sbjct: 419 KKGFVTIISSDTCSTTGFSSIKSLSVSKRNQS 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,165
Number of Sequences: 28952
Number of extensions: 274145
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)