Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060111.seq
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1274 - 27480012-27480383                                         31   1.1  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    29   4.6  
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107...    28   6.1  
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    28   6.1  
08_01_1002 + 10171942-10172859,10173369-10173452                       28   8.1  
05_01_0146 - 953957-956278,956468-956786,957185-957213                 28   8.1  

>12_02_1274 - 27480012-27480383
          Length = 123

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 543 LPPVPGVGNLRAAAFLGCGSRFSGSLSGI 457
           LPPVPG+G      F G G    G + GI
Sbjct: 61  LPPVPGMGGGGVGGFAGMGGPLGGVIGGI 89


>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 569 ESRIVIFRHYLPCREWVICAL 507
           +SR++IF HY  C + ++C+L
Sbjct: 524 DSRVIIFAHYRECVKEILCSL 544


>10_07_0135 +
           13308839-13308899,13310146-13310495,13310574-13310709,
           13310806-13310942,13311041-13311164,13313393-13313871
          Length = 428

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 431 SRVTGNQGSIPEREPEKRLPHPRKAAARKLPTPGTG 538
           +R   + GS+P R P +  P PR+ +A   P P  G
Sbjct: 382 TRRRSSSGSVP-RSPMRMQPSPRRLSASASPLPAAG 416


>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 461 PEREPEKRLPHPRKAAARKLPTPGTGGSDEK*RYGTLTRPRNRNEYTLNILTRNN 625
           P +  E  +P P K      P PGT  SD+     + T+P   NE T  IL   N
Sbjct: 631 PAKSDENSVPRPDKFDEDSGPRPGT--SDD----SSATKPAEHNESTAEILFNPN 679


>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 293 RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 457
           RA +  SL L    +DN CR  G++P  + +N+ +  F     FL   WL SRV   + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301

Query: 458 IPEREPEK 481
           + +RE  K
Sbjct: 302 VRDRENRK 309


>05_01_0146 - 953957-956278,956468-956786,957185-957213
          Length = 889

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 419 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAARKLPTPGTGGSDEK*RYGTLTRPRNRN 592
           LP  SR   N+  I    P     + R +    +  P T G+  +   GT + PR+RN
Sbjct: 5   LPSKSRSGPNESPISRGRPSTPSSNHRPSTPSSIHRPSTPGATRRSIGGTPSTPRSRN 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,185
Number of Sequences: 37544
Number of extensions: 420139
Number of successful extensions: 1172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)