Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060111.seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       36   0.031
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       36   0.031
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.054
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.51 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.51 
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   6.2  
SB_48635| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)                    28   6.2  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   8.3  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +2

Query: 50  KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 157
           ++ A WLILPVVICLSQRLSHACLS S      RMA
Sbjct: 126 RRVAIWLILPVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +2

Query: 50  KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 157
           ++ A WLILPVVICLSQRLSHACLS S      RMA
Sbjct: 102 RRVAIWLILPVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -2

Query: 494 DVVAVSQAPSPESNPDSPLPVTTM 423
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -2

Query: 485 AVSQAPSPESNPDSPLPVTTM 423
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 50  KKRAPWLILPVVICLSQRLS 109
           ++ A WLILPVVICLSQRLS
Sbjct: 147 RRVAIWLILPVVICLSQRLS 166


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 50  KKRAPWLILPVVICLSQRLS 109
           ++ A WLILPVVICLSQRLS
Sbjct: 123 RRVAIWLILPVVICLSQRLS 142


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 484 PFLRLPLRNRTLIPRYP 434
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 84  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 218
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 84   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 218
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 443 GNQGSIPEREPEKRLPHPRKAAARKLP 523
           GN+GS  + E EK LP P K A R  P
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKAKRTSP 78


>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 461 PEREPEKRLPHPRKAAARKLPTPGT 535
           P+  PE   P  RKAA R+ P PGT
Sbjct: 167 PQTNPEDSSPGNRKAANRETPPPGT 191


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 422 PWLSRVTGNQGSIPEREPEKRLPHPRKAAARKLPTPGTG-GSDEK 553
           P  ++ + NQ   PE E E+  P P K      P P  G G+ EK
Sbjct: 460 PSSAQPSANQSPEPEEEKEEASPVPSKDEEETSPMPAKGEGTPEK 504


>SB_48635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 434 RVTGNQGSIPEREPEKRLPHPRKAAARKLPTPGTGGSDE 550
           R  G++ S P R+P KR   P +A+  K+  P   G+DE
Sbjct: 319 RGKGSRRSSPPRQPLKR---PSRASQEKVEEPAAPGTDE 354


>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
          Length = 804

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 202 ITVVILELIHAIRTLTSEG*VLLLDQNQSTEGL 300
           I  V+ E++H I    +EG VL LD+N+++  L
Sbjct: 152 IARVVFEVVHRIYDRITEGFVLALDENKNSSQL 184


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 503 PSLDVVAVSQAPSPESNPDSPLP 435
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 461 PEREPEKRLPHPRKAAARKLPTPGTG 538
           P   P + +PHPR     ++P PG G
Sbjct: 297 PGYPPPQYMPHPRMRPPTRIPPPGMG 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,331,037
Number of Sequences: 59808
Number of extensions: 452416
Number of successful extensions: 1453
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)