Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060111.seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    32   0.34 
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    30   1.4  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   9.6  

>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 452 GSIPEREPEKRLPHPRKAAARKLPTPGTGGSDEK*RYGTLTRP 580
           G +P   P+ R+P P  A     P+   G + ++ RYGT   P
Sbjct: 816 GPVPPGPPQNRMPPPPPAQGAPSPSGAAGSNGKQPRYGTPAPP 858


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 554 IFRHYLPCREWVICALLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 402
           I R  +  +  V+   +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 543 ILREVVAPKATVLKTTVPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 142 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 246
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 512 ALLPSLDVVAVSQAPSP-ESNPDSPLPVT-TMVVAETTI 402
           A  P+  ++  SQAP P ++ P SP+  T T+   +TT+
Sbjct: 771 ATAPATPMLQASQAPQPLQAPPQSPMETTATVTYTKTTV 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,080
Number of Sequences: 27780
Number of extensions: 324823
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)