Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060111.seq
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    27   0.17 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = +1

Query: 115 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSEG*VLLLDQNQSTE 294
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT    VL LD ++STE
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT----VLWLD-SRSTE 282

Query: 295 GLASEVVN 318
            + +  VN
Sbjct: 283 RMIAASVN 290


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 305 PKSLILMNLDNFCRSHGQVPAT 370
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/48 (18%), Positives = 25/48 (52%)
 Frame = +3

Query: 57  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 200
           E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/48 (18%), Positives = 25/48 (52%)
 Frame = +3

Query: 57  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 200
           E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/48 (18%), Positives = 25/48 (52%)
 Frame = +3

Query: 57  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 200
           E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 87  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 200
           Y C  +    +     LRR   +  ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 578 PRNRNEYTLNILTRNNWEGQV 640
           PRN +EY  N L    W  ++
Sbjct: 368 PRNIDEYNNNDLDTKKWNNKI 388


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 503  AAARKLPTPGTGGSDE 550
            A AR+LP    GG+DE
Sbjct: 1560 APARELPDVNGGGNDE 1575


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,211
Number of Sequences: 438
Number of extensions: 4228
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)