Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060110.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   3.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   3.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.3  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 576 FSESSMKPTAAAIAYG 623
           FS  S  PTAA I+YG
Sbjct: 117 FSTCSSHPTAAFISYG 132


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 576 FSESSMKPTAAAIAYG 623
           FS  S  PTAA I+YG
Sbjct: 116 FSTCSSHPTAAFISYG 131


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 285 FGIEYCVVGVLATWFLAASPMRRSVSVNAT*DGVVL 178
           F   +C+VG+LA    + + +R+  SV A  +G+ L
Sbjct: 6   FIFAFCLVGILAVSEESINKLRKIESVCAEENGIDL 41


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -3

Query: 660 VHFRSPSTLFCQD-RKQSQQQWVS--LMIRRT 574
           VHFRSPST       +Q    W+   LM+RRT
Sbjct: 336 VHFRSPSTHNMSPWVRQVFLNWMPRLLMMRRT 367


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 77 PFCIFNQSCYLFLKQ 33
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,486
Number of Sequences: 438
Number of extensions: 4754
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)