Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060109.seq
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 3e-20
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 93 3e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 74 2e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.006
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.013
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.022
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.069
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.21
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.28
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.48
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 28 1.1
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 27 3.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.4
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 27 3.4
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 160 bits (389), Expect = 2e-40
Identities = 75/85 (88%), Positives = 79/85 (92%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
+GQTREHALLA+TLGVKQLIV V K
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNK 154
Score = 137 bits (331), Expect = 2e-33
Identities = 62/66 (93%), Positives = 64/66 (96%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMD+T +S+ RFEE G+NP F P SG GDNM+E MPW
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFV-PVSGFQGDNMIEPTTNMPWY 209
Query: 689 QG 694
QG
Sbjct: 210 QG 211
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 160 bits (388), Expect = 2e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
+GQTREHALLA+TLGVKQLIV V K
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNK 154
Score = 137 bits (331), Expect = 2e-33
Identities = 62/66 (93%), Positives = 64/66 (96%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMD+T +S+ RFEE G+NP F P SG GDNM+E MPW
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFV-PVSGFQGDNMIEPTTNMPWY 209
Query: 689 QG 694
QG
Sbjct: 210 QG 211
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 160 bits (388), Expect = 2e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
+GQTREHALLA+TLGVKQLIV V K
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNK 154
Score = 137 bits (331), Expect = 2e-33
Identities = 62/66 (93%), Positives = 64/66 (96%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMD+T +S+ RFEE G+NP F P SG GDNM+E MPW
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFV-PVSGFQGDNMIEPTTNMPWY 209
Query: 689 QG 694
QG
Sbjct: 210 QG 211
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.5 bits (222), Expect = 3e-20
Identities = 44/85 (51%), Positives = 55/85 (64%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
NGQTREHA L LG+ +++V V K
Sbjct: 300 NGQTREHAYLLRALGISEIVVSVNK 324
Score = 70.5 bits (165), Expect = 2e-13
Identities = 30/62 (48%), Positives = 43/62 (69%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 247
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 248 AE 253
E
Sbjct: 235 EE 236
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 93.5 bits (222), Expect = 3e-20
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG +
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 360
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
GQTREHA+LA T G+ L+V + K
Sbjct: 361 GGQTREHAVLARTQGINHLVVVINK 385
Score = 76.6 bits (180), Expect = 3e-15
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 247
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 248 AE 253
E
Sbjct: 296 EE 297
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.7 bits (173), Expect = 2e-14
Identities = 38/85 (44%), Positives = 54/85 (63%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP----- 155
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
QTREH LLA +GVKQ++V + K
Sbjct: 156 --QTREHLLLARQVGVKQIVVYINK 178
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 148
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +3
Query: 291 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 470
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R + +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVP 199
Query: 471 AFTLGVKQLIVGVTKW 518
+ K +G W
Sbjct: 200 RISFVNKMDRMGADPW 215
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI 157
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 306 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 306 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 78 GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCG 151
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.069
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 309 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 488
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 489 KQLIV 503
K +I+
Sbjct: 163 KHIII 167
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 282 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 306 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 318 IIDAPGHRDFIKNMITGTSQADCAVLIV 401
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = -2
Query: 299 SFELPESNIDCDTXSAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWW 120
S L N D + + V +PK I I++ F P S S C+Y S D W
Sbjct: 12 SSNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71
Query: 119 WT 114
T
Sbjct: 72 RT 73
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.4
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = +3
Query: 399 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTKWIPLNHHTVSPDLRKSRRXYP 578
VA GT E GI NG E+A+ A +I V + P++H + KSRR YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 579 HTSRRLATTPAA 614
L T AA
Sbjct: 96 AEVFELTNTLAA 107
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 321 IDAPGHRDFIKNMITGTSQADCAVLIV 401
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 489 KQLIVGVTKWIPLNHHTVSPDLRKSRRXYPHTSRRLATTPAA 614
K+ I + K +P +H ++PD R +P T+ L AA
Sbjct: 714 KERIDAIVKHVPKDHLWLNPDCGLKTRGWPETTADLKNMIAA 755
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 676 FGXKLQHVVSVPSRKWATKATAAGVVANLLDV*GYXLLDFL 554
F L H+ + PS +W A AN + GY L+++L
Sbjct: 21 FATLLAHLFTKPSLEWVYNHHATPFFANKFMLGGYLLVEYL 61
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 264 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 356
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,954
Number of Sequences: 5004
Number of extensions: 54963
Number of successful extensions: 195
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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