Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060109.seq
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             109   3e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)               100   1e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           98   7e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 84   9e-17
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.22 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.39 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.39 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.1  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   4.8  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  28   8.4  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
 Frame = +3

Query: 270 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 449
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 450 TREHALLAFTLGVKQLIVGVTK--WIPLNHHTVSP 548
           TREHA+L  +LGV QLIV + K   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score =  100 bits (239), Expect = 1e-21
 Identities = 52/74 (70%), Positives = 55/74 (74%)
 Frame = +2

Query: 56  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+   S      +
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59

Query: 236 DKLKAELXXYHNRY 277
            KLK EL   H  Y
Sbjct: 60  SKLKFELPCTHKIY 73


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 42/85 (49%), Positives = 60/85 (70%)
 Frame = +3

Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
            GQTREHA+LA T GVK L++ V K
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNK 291



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +2

Query: 140 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 253
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + E
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE 203


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +3

Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 377
           GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +2

Query: 200 MGKGSFKYAWVLDKLKAE 253
           MGKGSFKYAWVLDKLKAE
Sbjct: 1   MGKGSFKYAWVLDKLKAE 18


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 312 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 407
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 56  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 306 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 318 IIDAPGHRDFIKNMITGTSQADCAVLIV 401
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 71  THINIVVIGHVDSGKSTTTGHLIY 142
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 80   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 178
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 321 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 500
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 501 V 503
           +
Sbjct: 123 I 123


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   TSYLGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 142
           T+ LG   ++++R   +M +     + + V+G+VD+GKST  G L +
Sbjct: 207 TAELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,127,325
Number of Sequences: 59808
Number of extensions: 423607
Number of successful extensions: 986
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)