Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060109.seq
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 164 6e-41
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 164 6e-41
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 161 6e-40
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 142 3e-34
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 4e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 100 1e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 71 8e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 71 8e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 67 1e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 67 1e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 67 1e-11
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.005
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.028
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.085
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.26
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.26
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.79
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.79
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 1.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 1.0
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.0
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.4
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 28 5.6
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 28 5.6
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 28 7.4
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 28 7.4
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 164 bits (398), Expect = 6e-41
Identities = 77/85 (90%), Positives = 80/85 (94%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
NGQTREHALLA TLGVKQLIV K
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNK 154
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMDSTEPP+SE RF E GYNP F P SG +GDNMLE+ MPW
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF-VPISGFNGDNMLEVSSNMPWF 211
Query: 689 QG 694
+G
Sbjct: 212 KG 213
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 164 bits (398), Expect = 6e-41
Identities = 77/85 (90%), Positives = 80/85 (94%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
NGQTREHALLA TLGVKQLIV K
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNK 154
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMDSTEPP+SE RF E GYNP F P SG +GDNMLE+ MPW
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF-VPISGFNGDNMLEVSSNMPWF 211
Query: 689 QG 694
+G
Sbjct: 212 KG 213
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 161 bits (390), Expect = 6e-40
Identities = 89/142 (62%), Positives = 98/142 (69%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLIVGVTKWIPLNHHTVSPDLRKSRRXYPHTSRRLATTPAAVA 620
NGQTREHALLA TLGVKQL + L T SPD S R + T +
Sbjct: 130 NGQTREHALLAQTLGVKQL-------VSLRSPTRSPD-----------SSRRSDTIQRLF 171
Query: 621 FVAHFLEGTETTCWSXXPKCLG 686
++ + TETTC C G
Sbjct: 172 HLSQSPDSTETTCLRSPRTCHG 193
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 102 bits (244), Expect = 3e-22
Identities = 45/48 (93%), Positives = 48/48 (100%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 404
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMDSTEPP+SE RF E GYNP F P SG +GDNMLE+ MPW
Sbjct: 119 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF-VPISGFNGDNMLEVSSNMPWF 177
Query: 689 QG 694
+G
Sbjct: 178 KG 179
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (334), Expect = 4e-33
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLK 247
DKLK
Sbjct: 61 DKLK 64
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (272), Expect = 1e-25
Identities = 53/85 (62%), Positives = 63/85 (74%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 233 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFEN 292
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
GQT+EHALL +LGV QLIV V K
Sbjct: 293 GGQTKEHALLLRSLGVTQLIVAVNK 317
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +2
Query: 65 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 244
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 245 KAE 253
+ E
Sbjct: 227 EEE 229
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (272), Expect = 1e-25
Identities = 53/85 (62%), Positives = 63/85 (74%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 251 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFEN 310
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
GQT+EHALL +LGV QLIV V K
Sbjct: 311 GGQTKEHALLLRSLGVTQLIVAVNK 335
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +2
Query: 65 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 244
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 245 KAE 253
+ E
Sbjct: 245 EEE 247
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 100 bits (239), Expect = 1e-21
Identities = 44/85 (51%), Positives = 60/85 (70%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G +
Sbjct: 172 GKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDR 231
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
GQTREH++L T GVK L++ V K
Sbjct: 232 GGQTREHSMLVKTAGVKHLVILVNK 256
Score = 75.4 bits (177), Expect = 4e-14
Identities = 31/60 (51%), Positives = 45/60 (75%)
Frame = +2
Query: 59 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 238
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/85 (45%), Positives = 52/85 (61%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME----- 147
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
QT+EH +LA +GVK + + + K
Sbjct: 148 --QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTT 127
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/85 (45%), Positives = 52/85 (61%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME----- 147
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
QT+EH +LA +GVK + + + K
Sbjct: 148 --QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTT 127
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 151
Query: 441 NGQTREHALLAFTLGV 488
QTREH LLA +GV
Sbjct: 152 --QTREHLLLARQVGV 165
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 211
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 152
Query: 441 NGQTREHALLAFTLGV 488
QTREH LLA +GV
Sbjct: 153 --QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 211
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP----- 152
Query: 441 NGQTREHALLAFTLGV 488
QTREH LLA +GV
Sbjct: 153 --QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 211
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 261 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 437
GIT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE---- 243
Query: 438 KNGQTREHALLAFTLGVKQLIVGVTK 515
QT + A V QL+V V K
Sbjct: 244 ---QTAQSIKFAKDANV-QLVVAVNK 265
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 312 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 491
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 492 QLIVGVTKWIPLNHHTVSPDLRKSRR 569
++I+ + K +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 77 INIVVIGHVDSGKSTTT 127
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.085
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI 157
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 75 GITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 87 GITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 196
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGID 160
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GITI A + + IID PGH DF + D AVL++ G G
Sbjct: 97 GITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 267 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 267 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 32 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 142
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 32 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 142
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 270 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 270 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 309 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 404
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 520 IHFVTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 386
++ PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 11 LNLFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 318 IIDAPGHRDFIKNMITGTSQADCAVLIV 401
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 77 INIVVIGHVDSGKSTTT 127
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 28.3 bits (60), Expect = 5.6
Identities = 27/102 (26%), Positives = 45/102 (44%)
Frame = +3
Query: 282 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 461
++KFE+S + +T + K ITGT VL+V+ +F K+ Q
Sbjct: 104 VYKFESSLHRLTFGLTKSRTEDYKTKITGTLGKLQIVLVVSEAFWKFLNKRYKSAQIFFA 163
Query: 462 ALLAFTLGVKQLIVGVTKWIPLNHHTVSPDLRKSRRXYPHTS 587
F L + + I + W L+ H+ + RKS YP+ +
Sbjct: 164 FFPNFQLKILECIWHI--WATLDRHSATAVYRKS---YPNAA 200
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 155 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAELXXYHNRYCSLEVRN 298
+DK ++ KE E+ K KYA KLK +L N Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 312 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 407
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 158 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAELXXY 265
+KR ++ EKE + F Y LDK+K E Y
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCY 307
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 158 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAELXXY 265
+KR ++ EKE + F Y LDK+K E Y
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCY 242
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 312 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 312 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -2
Query: 497 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 339
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 338 VSRSINDGNI 309
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,328
Number of Sequences: 27780
Number of extensions: 311972
Number of successful extensions: 900
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -