Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060109.seq
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 151 3e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 151 3e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 151 3e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 151 3e-37
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 97 1e-20
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 92 4e-19
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 69 2e-12
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 66 2e-11
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 38 0.008
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 38 0.008
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 35 0.045
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 35 0.045
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 33 0.14
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 33 0.14
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.18
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.18
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 33 0.18
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.24
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 33 0.24
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.24
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.73
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.7
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.7
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.7
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 2.2
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 2.2
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 6.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 151 bits (367), Expect = 3e-37
Identities = 70/80 (87%), Positives = 76/80 (95%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLI 500
+GQTREHALLAFTLGVKQ+I
Sbjct: 130 DGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMD+T P YS+ R++E GYNP F P SG GDNM+E + W
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPF-VPISGFEGDNMIERSTNLDWY 211
Query: 689 QG 694
+G
Sbjct: 212 KG 213
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 151 bits (367), Expect = 3e-37
Identities = 70/80 (87%), Positives = 76/80 (95%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLI 500
+GQTREHALLAFTLGVKQ+I
Sbjct: 130 DGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMD+T P YS+ R++E GYNP F P SG GDNM+E + W
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPF-VPISGFEGDNMIERSTNLDWY 211
Query: 689 QG 694
+G
Sbjct: 212 KG 213
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 151 bits (367), Expect = 3e-37
Identities = 70/80 (87%), Positives = 76/80 (95%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLI 500
+GQTREHALLAFTLGVKQ+I
Sbjct: 130 DGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMD+T P YS+ R++E GYNP F P SG GDNM+E + W
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPF-VPISGFEGDNMIERSTNLDWY 211
Query: 689 QG 694
+G
Sbjct: 212 KG 213
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 151 bits (367), Expect = 3e-37
Identities = 70/80 (87%), Positives = 76/80 (95%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 441 NGQTREHALLAFTLGVKQLI 500
+GQTREHALLAFTLGVKQ+I
Sbjct: 130 DGQTREHALLAFTLGVKQMI 149
Score = 126 bits (303), Expect = 2e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEXXXXXXXXXXXXGYNPSCCRFRGPFSGRHGDNMLELXXKMPWV 688
NKMD+T P YS+ R++E GYNP F P SG GDNM+E + W
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPF-VPISGFEGDNMIERSTNLDWY 211
Query: 689 QG 694
+G
Sbjct: 212 KG 213
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 96.7 bits (230), Expect = 1e-20
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G +
Sbjct: 164 GKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYER 223
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
GQTREH LA TLGV +LIV V K
Sbjct: 224 GGQTREHVQLAKTLGVSKLIVVVNK 248
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/63 (42%), Positives = 45/63 (71%)
Frame = +2
Query: 65 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 244
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 245 KAE 253
+ E
Sbjct: 158 EEE 160
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 302 GITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDN 361
Query: 441 -NGQTREHALLAFTLGVKQLIVGVTK 515
GQTREHA + GV+Q+IV + K
Sbjct: 362 LKGQTREHARVLRGFGVEQVIVAINK 387
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/61 (49%), Positives = 44/61 (72%)
Frame = +2
Query: 71 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 250
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 251 E 253
E
Sbjct: 298 E 298
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/85 (41%), Positives = 51/85 (60%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+ G
Sbjct: 127 GITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP----- 181
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
QT+EH LLA +GV ++V + K
Sbjct: 182 --QTKEHILLAKQVGVPDMVVFLNK 204
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 53 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 187
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/85 (41%), Positives = 50/85 (58%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 115 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP----- 169
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
QT+EH LLA +GV L+ + K
Sbjct: 170 --QTKEHILLARQVGVPSLVCFLNK 192
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTT 127
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/90 (30%), Positives = 37/90 (41%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 441 NGQTREHALLAFTLGVKQLIVGVTKWIPLN 530
+ Q R + + K +G W LN
Sbjct: 178 DRQMRRYEVPRVAFINKLDRMGADPWKVLN 207
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI 157
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/90 (30%), Positives = 37/90 (41%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 441 NGQTREHALLAFTLGVKQLIVGVTKWIPLN 530
+ Q R + + K +G W LN
Sbjct: 178 DRQMRRYEVPRVAFINKLDRMGADPWKVLN 207
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI 157
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 249 LS*XGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
+S + + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 190 ISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 249 LS*XGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
+S + + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 190 ISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 297 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 476
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 477 TLGVKQLIV 503
+ +K +I+
Sbjct: 178 MMRLKHIII 186
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 297 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 476
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 477 TLGVKQLIV 503
+ +K +I+
Sbjct: 178 MMRLKHIII 186
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 294 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 44 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 163
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 264 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
IT+ + + Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 60 ITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGG 154
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 291 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 458
FE SK +V+ +D PGH + M+ G + D A+L++AA QT E
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSE 165
Query: 459 HALLAFTLGVKQLIV 503
H + +K +I+
Sbjct: 166 HLAAVEIMQLKHIII 180
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 312 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 309 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 488
+V+ +D PGH + M+ G + D A+LI+AA QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 489 KQLIV 503
K +I+
Sbjct: 174 KDIII 178
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTTGHLIYKCG 151
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 146 GITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 261 GITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GITI + + +E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 133 GITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 178
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 318 IIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 318 IIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 318 IIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 300 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCG 151
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 312 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 321 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,907,853
Number of Sequences: 28952
Number of extensions: 300117
Number of successful extensions: 854
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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