Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060108.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    62   7e-11
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   5.8  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.8  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +2

Query: 473 VSVPARQLPAP--ACFDASLFLQMNERKPTWLCPVCDRAAPYDSLVVDGYFQEVLTSXAP 646
           +S+P R +      CFDAS FL+MN++ P+W+CPVC     +  L++DG+ Q +L S   
Sbjct: 312 ISLPVRSVFCKHIQCFDASAFLEMNKQTPSWMCPVCASHIQFSDLIIDGFMQHILESTPS 371

Query: 647 GRPTAT 664
              T T
Sbjct: 372 NSETIT 377



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 45/80 (56%)
 Frame = +3

Query: 267 TRAYVLSVFMVKKLTSAELLQRLKNKGTKNPDYTRSLIKEKLSEDYDSEIATTSLRVSLM 446
           T++Y + V  VK  T   L+ ++K++  ++ +    +I+   +++ D++I  TS  +SL 
Sbjct: 248 TKSYSVVVCFVKVYTIENLVDQIKSRKAESKE---KIIERIKNDNQDADIIATSTDISLK 304

Query: 447 CPLGKMRMSCPCRPANCPHL 506
           CPL   R+S P R   C H+
Sbjct: 305 CPLSFSRISLPVRSVFCKHI 324


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
 Frame = +3

Query: 174 KKATASSKHIVAREAVAHGLQHDPGDVAADFTRAYVLSVFMVKKLTSAELLQRLKNKGTK 353
           +KA    +H +         QHD    + D  RA +  V       S     RLKN G +
Sbjct: 420 RKALDICRHAIELAEREWKAQHDNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQ 479

Query: 354 NPDYTRSLI---KEKLS-EDYDSEIATTSLRVSLMCPL 455
                 +L+   K  LS  D   + ++  LR  L+ PL
Sbjct: 480 QKAILCTLVVCEKTSLSVADVFEKYSSLCLRDRLIYPL 517


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 174 WFWSWLIGRYWIW*RTHLVIDFDINARREVVLLF 73
           WFW+ L+  Y  W +    IDF   +R  V  L+
Sbjct: 69  WFWTSLVYFYHAWDQKRNKIDFKFISRYIVATLW 102


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 512 FDASLFLQMNERKPTWLCPVCDRAAPYDSLVVDGYFQEV 628
           F+ S  L ++E+  T LC VC     + + +++G  ++V
Sbjct: 379 FENSRSLILHEKNLTELCEVCSYIQSFQNAILEGEREDV 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,324
Number of Sequences: 5004
Number of extensions: 38684
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)