Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060108.seq
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 46 3e-05
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 46 4e-05
07_03_0181 + 14808866-14808908,14809510-14809586,14812206-148123... 37 0.013
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 34 0.091
10_06_0092 + 10595021-10595515 28 6.0
02_02_0002 + 6001890-6002300,6002742-6002858 28 6.0
05_05_0196 + 23152389-23152658,23153042-23153092,23153167-231532... 28 7.9
02_01_0109 - 795066-796280 28 7.9
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 46.0 bits (104), Expect = 3e-05
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 509 CFDASLFLQMNERKPTWLCPVCDRAAPYDSLVVDGYFQEV 628
CFD F+++N+R W CP+C + D++++D YF +
Sbjct: 442 CFDLEAFVELNQRSRKWQCPICLKNYSLDNIIIDPYFNRI 481
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 45.6 bits (103), Expect = 4e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 509 CFDASLFLQMNERKPTWLCPVCDRAAPYDSLVVDGYFQEV 628
CFD F+++N+R W CP+C + +SL++D YF +
Sbjct: 385 CFDLETFVELNQRSRKWQCPICLKNYSLESLMIDPYFNRI 424
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 384 EKLSEDYDSEIATTSLRVSLMCPLGKMRMSCPCRPANCPHL 506
E D D E+ S+ V+L CP RM R C H+
Sbjct: 343 ENADSDSDLEVVAESVTVNLRCPNSGSRMRIAGRFKPCIHM 383
>07_03_0181 +
14808866-14808908,14809510-14809586,14812206-14812313,
14813270-14813431,14813760-14813864,14813949-14814011
Length = 185
Score = 37.1 bits (82), Expect = 0.013
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 509 CFDASLFLQMNERKPTWLCPVCDRAAPYDSLVVD 610
CF+ F+++N+R W CP C + D++++D
Sbjct: 150 CFELEAFVELNQRSRWWQCPTCLKNYSLDNIIID 183
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 34.3 bits (75), Expect = 0.091
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 533 QMNERKPTWLCPVCDRAAPYDSLVVD 610
Q+N RKPTW CP C+ + + L +D
Sbjct: 396 QLNLRKPTWRCPFCNTPSNFTDLRID 421
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 405 DSEIATTSLRVSLMCPLGKMRMSCPCRPANCPH 503
DS++ RVSL CP+ R+ P + C H
Sbjct: 362 DSDLLEGPSRVSLKCPISFRRIKTPIKGRLCKH 394
>10_06_0092 + 10595021-10595515
Length = 164
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 542 RSSAGTATRRSMQVRAVGGPART 474
R +AGT R S+QVRA GP T
Sbjct: 39 RRNAGTDARVSLQVRAASGPTLT 61
>02_02_0002 + 6001890-6002300,6002742-6002858
Length = 175
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = -2
Query: 604 DERVVGRGAVAHRTQPGRLALVHLQEQRRVEACRCGQLAGRHGHDMRILPSGHISD 437
+ RV GRG V P L H V C C + H + ++ HISD
Sbjct: 65 EARVAGRGVVVRGWAPQLAILSHRAVGGFVTHCGCNSILEDITHGVPVVTWPHISD 120
>05_05_0196 +
23152389-23152658,23153042-23153092,23153167-23153240,
23153356-23153443,23153541-23153738,23153824-23153895,
23154034-23154093,23154194-23154370,23154975-23155064
Length = 359
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 540 FICRNSDASKHAGAGSWRAGTDT 472
F+ ++ A G G+WRAG+DT
Sbjct: 14 FVLKSGHAIPAVGLGTWRAGSDT 36
>02_01_0109 - 795066-796280
Length = 404
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 613 AVHDERVVGRGAVAHRTQPGR 551
AVHD R +GRGAVA GR
Sbjct: 235 AVHDVRALGRGAVASMDGHGR 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,965
Number of Sequences: 37544
Number of extensions: 307580
Number of successful extensions: 939
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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