Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060108.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)                     79   3e-15
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                34   0.12 
SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)                     30   2.0  
SB_4927| Best HMM Match : DUF590 (HMM E-Value=0)                       30   2.0  
SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)                   29   3.5  
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_32587| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)
          Length = 389

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 36/66 (54%), Positives = 55/66 (83%)
 Frame = +3

Query: 276 YVLSVFMVKKLTSAELLQRLKNKGTKNPDYTRSLIKEKLSEDYDSEIATTSLRVSLMCPL 455
           +V+ + +V+ +TS+ L+QRLK +G +NPD++R+LIKEKL+ D DSE+ATTSLRV+L+CPL
Sbjct: 186 HVVVIRLVRLVTSSCLMQRLKARGYRNPDHSRALIKEKLAHDPDSEVATTSLRVTLLCPL 245

Query: 456 GKMRMS 473
             + +S
Sbjct: 246 HLVSLS 251


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 405  DSEIATTSLRVSLMCPLGKMRMSCPCRPANCPHL 506
            D  +  T+++VSL CP+   R+S P R  +C H+
Sbjct: 917  DDGVEQTAIKVSLKCPITFRRISLPARGHDCKHI 950



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 473  VSVPARQLPAP--ACFDASLFLQMNERKPTWLCPVCD 577
            +S+PAR        CFD   +L++N  + +W CPVC+
Sbjct: 938  ISLPARGHDCKHIQCFDLESYLRLNCERGSWKCPVCN 974


>SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)
          Length = 1007

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 557 WLCPVCDRAAPYDSLVVD 610
           ++CP+CD+  PY SLVV+
Sbjct: 742 YMCPLCDKQCPYWSLVVN 759


>SB_4927| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 936

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 557 WLCPVCDRAAPYDSLVVD 610
           ++CP+CD+  PY SLVV+
Sbjct: 371 YMCPLCDKQCPYWSLVVN 388


>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 579 RSHTGHSQVGLRSFICRNSDASKHAGAGSWRAGTDT 472
           R+  G  +V   +++CR     K  GAGS   GTD+
Sbjct: 339 RNRLGIIRVSNHNYLCRGEQVRKLLGAGSTMCGTDS 374


>SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)
          Length = 515

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 393 SEDYDSEIATTSLRVSLMCPLGKMRMSCPCRPANCPH 503
           +ED D+++  +   V   CP+    M+ P    NC H
Sbjct: 427 AEDMDADLIMSQATVQTKCPITLKEMTKPMSSKNCKH 463


>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = -3

Query: 246 LDRVGDRGRQLHERRCVYWTRWPFWFWSWLIGRYWIW*RTHLVIDFDINARREVVLLFT* 67
           L+RVG RG   + R      R   WFW W + R          I  + N+R ++V   T 
Sbjct: 133 LERVGHRGLLNYLRNLDCNCRLTLWFWIWRLQRARNSDSCQSEIGVNFNSRPQLV---TN 189

Query: 66  SLQQTKPQLSLYYVIKF 16
               T+  LSL ++  F
Sbjct: 190 EKSDTRTCLSLSWLSHF 206


>SB_32587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 294 MVKKLTSAELLQRLKNKGTKNPDYTRSL 377
           +V+K   +E+ +R+KN  T+NPD   SL
Sbjct: 129 LVEKAIESEIKERVKNLSTQNPDGFGSL 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,347,565
Number of Sequences: 59808
Number of extensions: 333703
Number of successful extensions: 1222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)