Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060108.seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.2  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 SLFLQMNERKPTWLCPVCDRAAPYDSLVVDG 613
           S FL       T     CD ++P+D +++ G
Sbjct: 237 SNFLSSTRTAETGTIRKCDESSPHDQVIIGG 267


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 554 SACARSSAGTATRRSMQVRAV 492
           S  ARS AG+   R + VRAV
Sbjct: 80  SCLARSPAGSVHSRDVNVRAV 100


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 184 VAFLVLELAYWSVL 143
           VAF++  + YWS +
Sbjct: 454 VAFIIFNILYWSFI 467


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 342 KGTKNPDYTRSLIKEKLS 395
           +GT+ P   RSL+ +KL+
Sbjct: 305 RGTRVPGIVRSLVLDKLA 322


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 588 GAARSHTGHSQVGLRSFICRNSDASKHAGAGS 493
           G  R   GH+Q+G  S+       +   G+GS
Sbjct: 209 GYGRHLPGHAQMGRPSYTTATMATTSTPGSGS 240


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 294 MVKKLTSAELLQRLKNKGT 350
           ++KKLT     +RL NKG+
Sbjct: 238 VIKKLTEDTQERRLSNKGS 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,934
Number of Sequences: 438
Number of extensions: 2509
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)