BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060107.seq (658 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 63 4e-11 SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 1.8 SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 1.8 SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.4 SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 27 2.4 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.1 SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.5 SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5 SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 25 9.6 >SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe|chr 1|||Manual Length = 560 Score = 62.9 bits (146), Expect = 4e-11 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 7/85 (8%) Frame = +1 Query: 19 YEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDN 177 Y IMFGPD CG + VH IF +K + HL + T+LYTLIVKPD Sbjct: 154 YRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQ 212 Query: 178 TYEVLIDNEKVESGDLEADWDFLPP 252 T+EV I+ + V G L +DF+PP Sbjct: 213 TFEVRINGDVVRQGSL--FYDFIPP 235 Score = 40.3 bits (90), Expect = 2e-04 Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 9/95 (9%) Frame = +3 Query: 255 KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX----HIPDPDATKXXXXXXXXXXXXX 422 +I DP A KP+DW +IPDP+A K Sbjct: 258 EIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWI 317 Query: 423 XXXIDNPDYK-----GVWAPKQIDNPAYKGPWVHP 512 I NP G W P I NP Y+GPW P Sbjct: 318 PSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPP 352 Score = 35.5 bits (78), Expect = 0.007 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 432 IDNPDYKGVWAPKQIDNPAYKGPW 503 I NP+Y+G W+P I NP + G W Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEW 363 Score = 29.5 bits (63), Expect = 0.45 Identities = 20/78 (25%), Positives = 26/78 (33%) Frame = +3 Query: 258 IKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXXXID 437 I DPEA+KPEDW + I Sbjct: 297 IPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEG-AGCGEWKPPMIRNPNYRGPWSPPMIP 355 Query: 438 NPDYKGVWAPKQIDNPAY 491 NP++ G W P++I NP Y Sbjct: 356 NPEFIGEWYPRKIPNPDY 373 Score = 25.4 bits (53), Expect = 7.3 Identities = 22/84 (26%), Positives = 25/84 (29%), Gaps = 7/84 (8%) Frame = +3 Query: 255 KIKDPEAKKPEDW--XXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXX 428 +I DPE KP DW IPDPDA K Sbjct: 241 EIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDP 300 Query: 429 XIDNP-----DYKGVWAPKQIDNP 485 P + G W P +I NP Sbjct: 301 EAQKPEDWDDEEDGDWIPSEIINP 324 >SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizosaccharomyces pombe|chr 2|||Manual Length = 551 Score = 27.5 bits (58), Expect = 1.8 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +1 Query: 82 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE-ADWDFLPPKK 258 S + K H KK +D Y+H+Y + P + + + ++ ES E + D+LP Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196 Query: 259 SRTLK 273 + K Sbjct: 197 MKQKK 201 >SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 926 Score = 27.5 bits (58), Expect = 1.8 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = -3 Query: 518 RFRV-DPWAFVSWVI-NLFWCPNALVVWVV 435 RFR+ D ++ SW I N+ W P LV W++ Sbjct: 2 RFRLNDSFSGKSWTIDNVQWTPQNLVAWIM 31 >SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 158 Score = 27.1 bits (57), Expect = 2.4 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Frame = +1 Query: 202 EKVESGDLEADWDFLPPKKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPP 381 EK + D+E D +F P L Q TG+ SP +P + N P Sbjct: 48 EKARTFDMEDDLEFCPSLSDEELVSIYQSTGL-SPTSSSPSLSPMTPNLYPNVL-----P 101 Query: 382 NLKTGMMRWTE---NGSHL*LTTQTTRAFG 462 N+ G+ +T +G H + ++T ++ G Sbjct: 102 NVHPGVSNYTHHPLSGLHQNVGSRTRKSSG 131 >SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosaccharomyces pombe|chr 1|||Manual Length = 332 Score = 27.1 bits (57), Expect = 2.4 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +2 Query: 440 PRLQGRLGTKTD**PSLQRPMGPPEIDNPEYTPDSNLYKRDEICAVGLD 586 P+ RLGTK P+ + PP + NP P N K ++ ++G D Sbjct: 262 PQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDPGLN-SKIAQLVSMGFD 309 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 26.6 bits (56), Expect = 3.1 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Frame = +1 Query: 217 GDLEADWDFLPPKKSRTLKPRNQKTGM---TSPLFQTPKTRSLRIGT-SLNTFQIQMPPN 384 GD ++DW + + L PRN GM ++P Q P + T S + PP+ Sbjct: 111 GDTDSDWILVGFNNNFGLAPRNYVEGMDASSAPASQEPSASGVNAPTVSAPNSMVSPPPS 170 Query: 385 LK 390 + Sbjct: 171 FQ 172 >SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosaccharomyces pombe|chr 1|||Manual Length = 1033 Score = 25.8 bits (54), Expect = 5.5 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Frame = +1 Query: 100 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE--SGDLEADWDFLPPKKSRTLK 273 H I + + +++ + HL TL KPD+ ++ID E +E G L+ ++ + S + Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESMEFCIGYLQNEFIDIVSDLSSVVI 742 Query: 274 PR---NQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQ 444 R QK MT + + + IG N + N+ G++ + L Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCIGDGGNDVGMIQVANVGIGIVGKEGQQASL-AADY 801 Query: 445 TTRAFGHQNRLI 480 + + F H +RL+ Sbjct: 802 SVKEFSHVSRLL 813 >SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 210 Score = 25.8 bits (54), Expect = 5.5 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +1 Query: 346 TSLNTFQIQMPPNLK 390 T++NT++ Q PPNLK Sbjct: 171 TAMNTYENQKPPNLK 185 >SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharomyces pombe|chr 1|||Manual Length = 301 Score = 25.0 bits (52), Expect = 9.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 536 PDSNLYKRDEICAVGLDFVAKSSPVP 613 P ++ + I A LDF KS PVP Sbjct: 222 PSESMVLSNNIAAEDLDFFKKSPPVP 247 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,822,285 Number of Sequences: 5004 Number of extensions: 63226 Number of successful extensions: 173 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 169 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 297805304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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