Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060107.seq
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    63   4e-11
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    27   1.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   1.8  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.4  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   5.5  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   9.6  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
 Frame = +1

Query: 19  YEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDN 177
           Y IMFGPD CG   + VH IF +K        + HL  +         T+LYTLIVKPD 
Sbjct: 154 YRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQ 212

Query: 178 TYEVLIDNEKVESGDLEADWDFLPP 252
           T+EV I+ + V  G L   +DF+PP
Sbjct: 213 TFEVRINGDVVRQGSL--FYDFIPP 235



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
 Frame = +3

Query: 255 KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX----HIPDPDATKXXXXXXXXXXXXX 422
           +I DP A KP+DW                         +IPDP+A K             
Sbjct: 258 EIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWI 317

Query: 423 XXXIDNPDYK-----GVWAPKQIDNPAYKGPWVHP 512
              I NP        G W P  I NP Y+GPW  P
Sbjct: 318 PSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPP 352



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 IDNPDYKGVWAPKQIDNPAYKGPW 503
           I NP+Y+G W+P  I NP + G W
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEW 363



 Score = 29.5 bits (63), Expect = 0.45
 Identities = 20/78 (25%), Positives = 26/78 (33%)
 Frame = +3

Query: 258 IKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXXXID 437
           I DPEA+KPEDW                          +                   I 
Sbjct: 297 IPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEG-AGCGEWKPPMIRNPNYRGPWSPPMIP 355

Query: 438 NPDYKGVWAPKQIDNPAY 491
           NP++ G W P++I NP Y
Sbjct: 356 NPEFIGEWYPRKIPNPDY 373



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 22/84 (26%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
 Frame = +3

Query: 255 KIKDPEAKKPEDW--XXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXX 428
           +I DPE  KP DW                        IPDPDA K               
Sbjct: 241 EIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDP 300

Query: 429 XIDNP-----DYKGVWAPKQIDNP 485
               P     +  G W P +I NP
Sbjct: 301 EAQKPEDWDDEEDGDWIPSEIINP 324


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 82  SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE-ADWDFLPPKK 258
           S + K H  KK    +D  Y+H+Y +   P +   + +  ++ ES   E  + D+LP   
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196

Query: 259 SRTLK 273
            +  K
Sbjct: 197 MKQKK 201


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 518 RFRV-DPWAFVSWVI-NLFWCPNALVVWVV 435
           RFR+ D ++  SW I N+ W P  LV W++
Sbjct: 2   RFRLNDSFSGKSWTIDNVQWTPQNLVAWIM 31


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = +1

Query: 202 EKVESGDLEADWDFLPPKKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPP 381
           EK  + D+E D +F P      L    Q TG+ SP   +P    +      N       P
Sbjct: 48  EKARTFDMEDDLEFCPSLSDEELVSIYQSTGL-SPTSSSPSLSPMTPNLYPNVL-----P 101

Query: 382 NLKTGMMRWTE---NGSHL*LTTQTTRAFG 462
           N+  G+  +T    +G H  + ++T ++ G
Sbjct: 102 NVHPGVSNYTHHPLSGLHQNVGSRTRKSSG 131


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 440 PRLQGRLGTKTD**PSLQRPMGPPEIDNPEYTPDSNLYKRDEICAVGLD 586
           P+   RLGTK    P+ +    PP + NP   P  N  K  ++ ++G D
Sbjct: 262 PQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDPGLN-SKIAQLVSMGFD 309


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +1

Query: 217 GDLEADWDFLPPKKSRTLKPRNQKTGM---TSPLFQTPKTRSLRIGT-SLNTFQIQMPPN 384
           GD ++DW  +    +  L PRN   GM   ++P  Q P    +   T S     +  PP+
Sbjct: 111 GDTDSDWILVGFNNNFGLAPRNYVEGMDASSAPASQEPSASGVNAPTVSAPNSMVSPPPS 170

Query: 385 LK 390
            +
Sbjct: 171 FQ 172


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
 Frame = +1

Query: 100  HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE--SGDLEADWDFLPPKKSRTLK 273
            H I + +  +++ + HL TL  KPD+   ++ID E +E   G L+ ++  +    S  + 
Sbjct: 686  HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESMEFCIGYLQNEFIDIVSDLSSVVI 742

Query: 274  PR---NQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQ 444
             R    QK  MT  + +  +     IG   N   +    N+  G++      + L     
Sbjct: 743  CRCTPTQKANMTRLIQEKKQASVCCIGDGGNDVGMIQVANVGIGIVGKEGQQASL-AADY 801

Query: 445  TTRAFGHQNRLI 480
            + + F H +RL+
Sbjct: 802  SVKEFSHVSRLL 813


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 346 TSLNTFQIQMPPNLK 390
           T++NT++ Q PPNLK
Sbjct: 171 TAMNTYENQKPPNLK 185


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 536 PDSNLYKRDEICAVGLDFVAKSSPVP 613
           P  ++   + I A  LDF  KS PVP
Sbjct: 222 PSESMVLSNNIAAEDLDFFKKSPPVP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,285
Number of Sequences: 5004
Number of extensions: 63226
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)