Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060107.seq
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 124 8e-29
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 123 1e-28
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 119 2e-27
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 118 4e-27
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 76 3e-14
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 65 4e-11
01_05_0374 - 21598480-21598487,21599547-21600672 29 3.3
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 28 5.7
05_01_0039 + 270145-270224,270347-270417,271075-271180,271837-27... 28 7.5
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192... 28 7.5
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 124 bits (298), Expect = 8e-29
Identities = 51/85 (60%), Positives = 63/85 (74%)
Frame = +1
Query: 10 ETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV 189
ETPY IMFGPDICG TKKVH I + GKNHLIKKD+ CK D TH+YTLI++PD Y +
Sbjct: 142 ETPYSIMFGPDICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSI 201
Query: 190 LIDNEKVESGDLEADWDFLPPKKSR 264
LIDN + ++G + DW+ +PPK R
Sbjct: 202 LIDNTEKQTGSIYDDWNIIPPKNKR 226
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +3
Query: 261 KDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX-HIPDPDATKXXXXXXXXXXXXXXXXID 437
+DPEAKKPEDW I DP+ATK I
Sbjct: 226 RDPEAKKPEDWDDNEYIPDPEDKKPEGYDDIPKEITDPEATKPEDWDDEEDGEWTAPTIP 285
Query: 438 NPDYKGVWAPKQIDNPAYKGPWVHP 512
NP+YKG W K++ NP YKG W P
Sbjct: 286 NPEYKGPWNQKKLKNPNYKGKWKAP 310
Score = 32.3 bits (70), Expect = 0.35
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Frame = +3
Query: 219 RPRGRLGLPSA*KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXX 398
+P G +P +I DPEA KPEDW IP+P+
Sbjct: 249 KPEGYDDIPK--EITDPEATKPEDWDDEEDGEWTAPT----------IPNPE-------- 288
Query: 399 XXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYK-GPWVH 509
+ NP+YKG W I NP YK P+++
Sbjct: 289 --YKGPWNQKKLKNPNYKGKWKAPLIPNPDYKDDPYIY 324
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 123 bits (296), Expect = 1e-28
Identities = 48/93 (51%), Positives = 70/93 (75%)
Frame = +1
Query: 10 ETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV 189
+TPY +MFGPDICG TKK+H+I SY+G+N+ IKKD++C+ D TH+YT I++PD +Y +
Sbjct: 133 DTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSI 192
Query: 190 LIDNEKVESGDLEADWDFLPPKKSRTLKPRNQK 288
L+DN + ESG + DWD LPP+K + + + K
Sbjct: 193 LVDNRERESGSMYTDWDILPPRKIKDVHAKKPK 225
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/87 (35%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX-HIPDPDATKXXXXXXXXXXXXXXXX 431
KIKD AKKP+DW IPDP K
Sbjct: 215 KIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIWKPRM 274
Query: 432 IDNPDYKGVWAPKQIDNPAYKGPWVHP 512
I NP YKG W K+I NP YKG W P
Sbjct: 275 IPNPAYKGPWKRKKIKNPNYKGKWKIP 301
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 432 IDNPDYKGVWAPKQIDNPAYK 494
I NP+YKG W IDNP ++
Sbjct: 289 IKNPNYKGKWKIPWIDNPEFE 309
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 119 bits (287), Expect = 2e-27
Identities = 50/83 (60%), Positives = 62/83 (74%)
Frame = +1
Query: 10 ETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV 189
+TPY IMFGPDICG TKKVH IF+ KNHLIKKD+ C+ D +H+YTLI+ PD TY +
Sbjct: 135 DTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTI 194
Query: 190 LIDNEKVESGDLEADWDFLPPKK 258
LIDN + +SG + WD LPPK+
Sbjct: 195 LIDNVEKQSGSIYEHWDILPPKQ 217
Score = 64.9 bits (151), Expect = 5e-11
Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX-HIPDPDATKXXXXXXXXXXXXXXXX 431
+IKDPEAKKPEDW IPDPDA K
Sbjct: 217 QIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPT 276
Query: 432 IDNPDYKGVWAPKQIDNPAYKGPWVHP 512
I NP+YKG W K+I NP Y+G W P
Sbjct: 277 IPNPEYKGPWKQKKIKNPNYQGKWKAP 303
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 482 PSLQRPMGPPEIDNPEYTPDSNLYKRDEICAVGLD 586
P+ Q P IDNP++ D +Y D + +G++
Sbjct: 294 PNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIE 328
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 118 bits (284), Expect = 4e-27
Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 3/94 (3%)
Frame = +1
Query: 10 ETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV 189
+TPY MFGPDICG TKK+H+I SY+G+N+ IKKD++C+ D TH YT I++PD +Y +
Sbjct: 133 DTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSL 192
Query: 190 LIDNEKVESGDLEADWDFLPPKK---SRTLKPRN 282
L+DN + E G + DWD LPP+K S KP++
Sbjct: 193 LVDNREREFGSMYTDWDILPPRKIKESNAKKPKD 226
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX-HIPDPDATKXXXXXXXXXXXXXXXX 431
KIK+ AKKP+DW IPDP K
Sbjct: 215 KIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVWKPRM 274
Query: 432 IDNPDYKGVWAPKQIDNPAYKGPWVHP 512
I NP+YKG W K+I NP YKG W P
Sbjct: 275 IPNPEYKGRWKRKKIKNPNYKGKWKIP 301
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 432 IDNPDYKGVWAPKQIDNPAYK 494
I NP+YKG W IDNP ++
Sbjct: 289 IKNPNYKGKWKIPWIDNPEFE 309
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 440 PRLQGRLGTKTD**PSLQRPMGPPEIDNPEYTPDSNLYKRDEICAVGLD 586
P +GR K P+ + P IDNPE+ D +LY + VG++
Sbjct: 278 PEYKGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIE 326
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +1
Query: 91 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKSR 264
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPPKK +
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKK 572
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 65.3 bits (152), Expect = 4e-11
Identities = 41/87 (47%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Frame = +1
Query: 10 ETPYEIMFGPDICGPGTKKVHVIFSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKP 171
ETPY IMFGPD CG T KVH I +K GK H +K D +H+YT I+KP
Sbjct: 127 ETPYTIMFGPDKCG-STNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKP 185
Query: 172 DNTYEVLID-NEKVESGDLEADWDFLP 249
DN +L+D EK ++ L AD DF P
Sbjct: 186 DNEVRILVDGEEKKKANFLSAD-DFEP 211
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXXX- 431
+I DPEA KPEDW P K
Sbjct: 273 EIDDPEANKPEDWDDEEDGEWEAPKIDNPKCE--EAPGCGEWKRPMKQNPAYKGKWHAPL 330
Query: 432 IDNPDYKGVWAPKQIDNPAY 491
IDNP+YKG+W P++I NP Y
Sbjct: 331 IDNPNYKGIWKPQEIPNPEY 350
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Frame = +3
Query: 255 KIKDPEAKKPEDW----XXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXX 422
KI DP+A KP+DW I DP+A K
Sbjct: 235 KIPDPDAVKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWE 294
Query: 423 XXXIDNPDYK-----GVWAPKQIDNPAYKGPWVHP 512
IDNP + G W NPAYKG W P
Sbjct: 295 APKIDNPKCEEAPGCGEWKRPMKQNPAYKGKWHAP 329
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +3
Query: 438 NPDYKGVWAPKQIDNPAYKGPW 503
NP YKG W IDNP YKG W
Sbjct: 319 NPAYKGKWHAPLIDNPNYKGIW 340
>01_05_0374 - 21598480-21598487,21599547-21600672
Length = 377
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 509 PEIDNPEYTPDSNLYKRDEICAVGLDFVAKSSPVPFFGRLSLFTXRP 649
PE + P+ P L E A+ LD V S+ +PFF LFT P
Sbjct: 90 PEAEGPQVPPKVKL----EPHALRLDLVILSNQIPFFVLEDLFTMTP 132
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 201 IVNEDFIGVVRFHNQSVQMCVDI 133
+V EDF+ + F +Q+V +C+D+
Sbjct: 353 LVEEDFVQIAEFLHQAVTICLDV 375
>05_01_0039 +
270145-270224,270347-270417,271075-271180,271837-271969,
272075-272160,272359-272527
Length = 214
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 458 NALVVWVVNHRWLPFSVHLIIPVFRFGGI 372
NA+ V V+N P + LI+P RFG +
Sbjct: 69 NAVTVMVLNFVVTPLELSLIVPFLRFGEV 97
>01_07_0061 +
40818077-40818241,40818494-40818716,40819015-40819263,
40819455-40819505,40819611-40819871,40819994-40820046,
40820234-40820348,40820475-40820696,40821280-40822253
Length = 770
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 606 GLDFATKSRPTAQISSRLYRFESGVYSGLSISGGPMGLCKLGYQSVL 466
G + A +S T Q ++RL RF+S I GG K+G+ + L
Sbjct: 16 GPNAAFESEKTLQTTTRLQRFDSLHMEAGKIPGGQSHTAKVGWATTL 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,030
Number of Sequences: 37544
Number of extensions: 432831
Number of successful extensions: 1147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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