Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060107.seq
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 5e-18
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 69 3e-12
SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30) 36 0.038
SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2) 30 1.9
SB_29225| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08) 29 2.5
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 29 2.5
SB_47552| Best HMM Match : CUT (HMM E-Value=9.6) 29 2.5
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_16112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 4.4
SB_3398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) 28 5.8
SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43) 28 5.8
SB_3156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_48836| Best HMM Match : fn3 (HMM E-Value=4e-31) 28 7.7
SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 28 7.7
SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 28 7.7
SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095) 28 7.7
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/86 (47%), Positives = 44/86 (51%)
Frame = +3
Query: 258 IKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXXXID 437
IKDPEAKKPEDW +IPDPDA K ID
Sbjct: 891 IKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPDPDAKKPEDWDDEIDGEWEPPMID 950
Query: 438 NPDYKGVWAPKQIDNPAYKGPWVHPK 515
NP+YKG W PKQIDNP YKG WVHP+
Sbjct: 951 NPEYKGEWKPKQIDNPNYKGEWVHPE 976
Score = 86.6 bits (205), Expect = 2e-17
Identities = 41/65 (63%), Positives = 48/65 (73%)
Frame = +1
Query: 61 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 240
K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESG+LE DWD
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884
Query: 241 FLPPK 255
FLPPK
Sbjct: 885 FLPPK 889
Score = 36.3 bits (80), Expect(2) = 0.001
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 509 PEIDNPEYTPDSNLYKRDEICAVGLD 586
PEIDNPEY D LY +I A+G D
Sbjct: 975 PEIDNPEYKADDKLYMYKDIGAIGFD 1000
Score = 23.0 bits (47), Expect(2) = 0.001
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 506 PPEIDNPEY 532
PP IDNPEY
Sbjct: 946 PPMIDNPEY 954
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 69.3 bits (162), Expect = 3e-12
Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Frame = +1
Query: 10 ETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK---------DDVYTHLYTL 159
+TPY IMFGPD CG +K+H IF +K KN I++ K D THL+TL
Sbjct: 38 KTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVFDGKKTHLFTL 96
Query: 160 IVKPDNTYEVLIDNEKVESGDLEAD 234
+V+PDNT+EV ID E V G L D
Sbjct: 97 VVRPDNTFEVFIDQESVNKGSLLED 121
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Frame = +3
Query: 255 KIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX----HIPDPDATKXXXXXXXXXXXXX 422
KI DP+A+KP+DW ++PDP+ K
Sbjct: 148 KIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGWLDDEPEYVPDPNGIKPEDWDDEEDGEWE 207
Query: 423 XXXIDNPDYK----GVWAPKQIDNPAYKGPWVHP 512
I NP + G W P DNP YKG W P
Sbjct: 208 APQIANPKCEKVGCGEWKPPMADNPEYKGKWSAP 241
Score = 35.5 bits (78), Expect = 0.038
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 435 DNPDYKGVWAPKQIDNPAYK 494
DNP+YKG W+ IDNP YK
Sbjct: 230 DNPEYKGKWSAPLIDNPNYK 249
>SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)
Length = 227
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = -3
Query: 401 IIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFLGFRVLDFLGG 246
++ +F GGIW++ R + IL+L++F + L++ V +FLG VL GG
Sbjct: 167 MVVIFCMGGIWVYPFMRKLNILQLVLF-FTGAYLLVAVVYFLG-EVLSKFGG 216
>SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2)
Length = 371
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 364 QIQMPPNLKTGMMRWTENGSHL*LTTQTTRAFGHQNRL 477
+I MP L++G +W +NGS + T++A+G+ N L
Sbjct: 289 RIAMPSKLQSGS-QWQQNGSSNQEASTTSQAYGYTNEL 325
>SB_29225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 232 DWDFLPPKKSRT-LKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPPNLKTGMMRW 408
DW L +K R + N++TG+ + L QT K + + Q PPN + GM+R
Sbjct: 60 DWSTLSKRKDRIGQRSPNERTGLVNAL-QT-KGHDWSMPSKRKDTIGQCPPNERRGMIRL 117
Query: 409 TEN 417
EN
Sbjct: 118 PEN 120
>SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08)
Length = 342
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 278 LGFRVLDFLGGRKSQSASRSPDSTFSLSMRTS 183
+ FRVL FL R+ Q+ +STF+ SMR++
Sbjct: 181 MSFRVLKFLHRRRRQAHPLQVNSTFNASMRST 212
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 115 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 240
D+ CKDD V D T E L+D+ +V+S L D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526
>SB_47552| Best HMM Match : CUT (HMM E-Value=9.6)
Length = 156
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 232 DWDFLPPKKSRT-LKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPPNLKTGMMRW 408
DW L +K R + N++TG+ + L QT + T Q PPN + GM+R
Sbjct: 39 DWSTLSKRKDRIGQRSPNERTGLVNAL-QTKGQDWSTLSKRKYTIG-QCPPNERRGMVRL 96
Query: 409 TEN 417
EN
Sbjct: 97 PEN 99
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 193 IDNEKVES-GDLEADWDFLPPKKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQI 369
+DN V + D++ WD+ + + PRN K +T P K R I +Q
Sbjct: 74 MDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEVMFENYQF 133
Query: 370 Q 372
+
Sbjct: 134 E 134
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 79 FSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKK 258
FSY G K CK + L + +N EV +DN K ++A+WD L K
Sbjct: 89 FSYAGFEMQPKTYNHCKIALLNVELELKAEKENA-EVRLDNVKDYQSIVDAEWDILYDKL 147
Query: 259 SRTLK 273
+ +K
Sbjct: 148 DKVVK 152
>SB_16112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 485 SLQRPMGPPEIDNPEYTPDSNLYKRDEICAVGLDFV 592
+L+ P GPP ++N Y + N K++++ AV FV
Sbjct: 31 ALKIPFGPPPVENSGYAAE-NSRKKEDLAAVAPRFV 65
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -1
Query: 220 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 122
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
>SB_3398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 485 SLQRPMGPPEIDNPEYTPD 541
SL+ P GPP ++NP Y D
Sbjct: 172 SLKVPFGPPPVENPGYAAD 190
>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
Length = 454
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -3
Query: 422 LPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFL 276
LP+ + L + R G + + R++ +LR+ ++SG+ + ++ FL
Sbjct: 233 LPYYIVLAVEKSRTGSLSVMRAARMLRVLRIFKLSRYSSGMRVLLYTFL 281
>SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43)
Length = 337
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -3
Query: 455 ALVVWVVNHRWLPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFG 318
ALV V W+PF + +I VFR ++W++ R++ ++++L +G
Sbjct: 214 ALVTGVFIVCWVPFFMITVIYVFRPFSWFVWDL-RVLILIKVLHYG 258
>SB_3156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 244 LPPKKSRTLKPRNQKTGMTSPL 309
L PK SR + PRN++T T P+
Sbjct: 83 LAPKSSRPIHPRNRQTSPTQPV 104
>SB_48836| Best HMM Match : fn3 (HMM E-Value=4e-31)
Length = 199
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -2
Query: 648 GRXVNKESRPKNGTGLDFATKSRPTAQISSRLYRFESGVYSGLSISGGPMGLCKLGYQSV 469
G +N + PKN T L + P ++G+ +G + P G G ++
Sbjct: 103 GFPLNVQGSPKNSTALLVTWQEPPQED--------QNGIITGYQVQFHPQGGGSAGMSTM 154
Query: 468 LVPKRPCSL 442
LVP P L
Sbjct: 155 LVPSSPAEL 163
>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 421
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 317 VWNSGLVIPVFWFLGFRVLDFLGGRKSQSASRSPDSTFSLSMRTS 183
V N + + + + RVL +L R+ Q+ +STF+ SMR++
Sbjct: 216 VLNYVIPVMILTVMSVRVLKYLHRRRQQAHPLQANSTFNASMRST 260
>SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 539
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 411 RPSHHPSLQVWWHLDLECVQACPNPQASCLRGL 313
+P HHP L W H L CP+ C +GL
Sbjct: 30 QPCHHPCLWKWVHAHLTPRSTCPH----CRKGL 58
>SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095)
Length = 214
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 400 MRWTENGSHL*LTTQTTRAFGHQNRLITQLTKAHGST 510
+++ E G H + ++ + F H+N+L + K H ++
Sbjct: 161 LKYHEKGCHPCVCNESNKTFDHENKLKRHINKKHAAS 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,692,712
Number of Sequences: 59808
Number of extensions: 499916
Number of successful extensions: 1276
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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