Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060107.seq
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.48 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.48 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.84 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 YTHLYTLIVKPDNTYEVLIDNEKVES 216
           Y H Y +  KP N  E++  N K+ES
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIES 453


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 YTHLYTLIVKPDNTYEVLIDNEKVES 216
           Y H Y +  KP N  E++  N K+ES
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIES 453


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 537 LIQTCTSATKSALSVSILWQSQVRYHSLDDFPYLLD 644
           LIQ+  S    + S  IL Q  +R ++   FPY+ D
Sbjct: 433 LIQSQPSPQYPSTSSHILQQPSIRTYTQQQFPYVHD 468


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 461 PNALV-VWVVNHRWLPFSVHLIIPVF 387
           PN +V  W+ + R+LP S+ +++  F
Sbjct: 796 PNGIVKTWIAHDRYLPNSLRILLKRF 821



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = +1

Query: 4    TRETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLI 162
            +RE+ ++  +  D+      +++ +  Y+G +  +  D    +DVY  L  +I
Sbjct: 1037 SRESGFKKTYVQDLIQAEASQIYDMLVYEGGHFYVCGDCTMAEDVYQTLKHII 1089


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 322 KTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQTTRAF 459
           K R+    T+LN   +  PPNL+    R  E  S +        AF
Sbjct: 295 KERNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQFVVDAVYAF 340


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 322 KTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQTTRAF 459
           K R+    T+LN   +  PPNL+    R  E  S +        AF
Sbjct: 385 KERNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQFVVDAVYAF 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,534
Number of Sequences: 438
Number of extensions: 4270
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)