Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060106.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    28   0.082
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    23   2.3  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   5.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 0.082
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 472 LHHHGRSLRTGQRRXVQGATSHHLGQNFSK 561
           +HHH  SL  G+   V+GA +HHLG  +S+
Sbjct: 134 VHHHQTSL-LGK---VEGAATHHLGSVYSR 159


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 419 IPVIKGRKTEKEKFAGGDYTTTV 487
           +P+I     E+ K A GDYT  V
Sbjct: 62  VPIITRVINEEVKLASGDYTLPV 84


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 419 IPVIKGRKTEKEKFAGGDYT 478
           +P+I  +  +  K A GDYT
Sbjct: 62  VPIIARQLNQDLKLASGDYT 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,409
Number of Sequences: 336
Number of extensions: 1961
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)