Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060106.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427...   116   2e-26
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351...    82   5e-16
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    29   3.4  
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327...    28   6.0  

>12_02_0178 -
           14941342-14941391,14941909-14942002,14942498-14942716,
           14943409-14943492,14943783-14944067,14944349-14944501,
           14944618-14944740,14945429-14945495,14946122-14946309,
           14947134-14947250,14947720-14947812,14948377-14948459,
           14948565-14948610
          Length = 533

 Score =  116 bits (278), Expect = 2e-26
 Identities = 52/82 (63%), Positives = 60/82 (73%)
 Frame = +2

Query: 257 NVVRWEFKQPQPFLXXREFLWQEGHTAXXXKXXXXXXXLIXLDLYARVYEELLAIPVIKG 436
           NVVRWEF  P PF+  REFLWQEGHTA   K       L  L+LY R+YEE LA+PV KG
Sbjct: 162 NVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRRIYEEFLAVPVSKG 221

Query: 437 RKTEKEKFAGGDYTTTVEAYVP 502
           RK+E EKFAGG YTT+VEA++P
Sbjct: 222 RKSEMEKFAGGLYTTSVEAFIP 243



 Score =  114 bits (274), Expect = 7e-26
 Identities = 50/82 (60%), Positives = 62/82 (75%)
 Frame = +3

Query: 9   AEFRKLGVKDGYFPIFVSNAALEREKTHIADFAPEVAWVTHSGXSELAEPIAVRPTSXXV 188
           AE +KL +K  YFP+FV+   L++EK HI  FAPEVAWVT SG S+L  PIA+RPTS  V
Sbjct: 79  AEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPEVAWVTKSGKSDLEAPIAIRPTSETV 138

Query: 189 MYPAYAKWIQSHRDLXLKLNXW 254
           MYP ++KWI+SHRDL L+ N W
Sbjct: 139 MYPYFSKWIRSHRDLPLRCNQW 160



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/50 (60%), Positives = 41/50 (82%)
 Frame = +1

Query: 511 RXVQGATSHHLGQNFSKMFEIVYDDAETLEKNYVYQNSWGFTTRTIGVMV 660
           R VQGATSH LGQNF+KMF+I +++ +   ++ V+QNSW +TTR+IGVMV
Sbjct: 247 RGVQGATSHCLGQNFAKMFDITFEN-DKGSRSMVWQNSWAYTTRSIGVMV 295


>07_01_0465 +
           3513296-3513631,3514386-3514442,3515196-3515306,
           3515466-3515552,3515627-3515740,3515850-3516056,
           3516291-3516428,3516691-3516852,3516939-3517138,
           3517429-3517554,3517644-3517785
          Length = 559

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 35/81 (43%), Positives = 53/81 (65%)
 Frame = +3

Query: 12  EFRKLGVKDGYFPIFVSNAALEREKTHIADFAPEVAWVTHSGXSELAEPIAVRPTSXXVM 191
           +F++ G  + YFP F+  + +E+E +H+  F+PE+A VT  G  EL E + VRPTS  ++
Sbjct: 118 KFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIV 177

Query: 192 YPAYAKWIQSHRDLXLKLNXW 254
              + KWIQS+RDL L +N W
Sbjct: 178 NHMFTKWIQSYRDLPLMINQW 198



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 36/79 (45%), Positives = 46/79 (58%)
 Frame = +2

Query: 257 NVVRWEFKQPQPFLXXREFLWQEGHTAXXXKXXXXXXXLIXLDLYARVYEELLAIPVIKG 436
           NV RWE +  +PF+   EFLWQEGHTA           +  +D+Y +   E  AIPVI G
Sbjct: 200 NVTRWEMRT-KPFIRTLEFLWQEGHTAHATLEEAEKEAMQMIDVYTKFAYEQAAIPVIPG 258

Query: 437 RKTEKEKFAGGDYTTTVEA 493
           RK+  E FAG + T T+EA
Sbjct: 259 RKSRVETFAGANRTYTIEA 277



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/53 (41%), Positives = 34/53 (64%)
 Frame = +1

Query: 502 GQRRXVQGATSHHLGQNFSKMFEIVYDDAETLEKNYVYQNSWGFTTRTIGVMV 660
           G R+ +Q  TSH+LGQNFS+ F   + D E  +  +V+Q SW  +TR +G ++
Sbjct: 280 GDRKALQAGTSHNLGQNFSRAFGTQFMD-ENSQIEHVWQTSWAISTRFVGGII 331


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 118 ATSGAKSAMCVFSRSSAAFDTNI----GKYPSLTPSFRNSARA 2
           AT+GA +A C  S S+A F T +      YP L  +FR  A A
Sbjct: 20  ATTGAAAAQCCSSSSTALFPTPVPSLRAYYPRLLLAFRRPAVA 62


>01_05_0712 -
           24531654-24531874,24532438-24532538,24532621-24532716,
           24532951-24533048,24533827-24533883,24534764-24534895,
           24535042-24535155,24535227-24535359,24535448-24535678,
           24535761-24535843,24536009-24536137,24536504-24536599,
           24536719-24536773,24537316-24537386,24537472-24537525,
           24537691-24537768,24537985-24538117,24539381-24539496,
           24539580-24539651,24540113-24540218,24540657-24540772,
           24541170-24541319,24541410-24541492,24541591-24541669,
           24542645-24542695
          Length = 884

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 526 ATSHHLGQNFSKMFEIVYDDAETLEKNYVYQN 621
           A +HHL  N SK  E++     TLE +Y  +N
Sbjct: 152 AVAHHLSSNSSKAIEVLEAYEGTLEDDYPPEN 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,733
Number of Sequences: 37544
Number of extensions: 257962
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)