Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060106.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)               144   6e-35
SB_56518| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)                       29   2.7  
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   4.6  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   6.1  

>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score =  144 bits (349), Expect = 6e-35
 Identities = 66/82 (80%), Positives = 72/82 (87%)
 Frame = +3

Query: 9   AEFRKLGVKDGYFPIFVSNAALEREKTHIADFAPEVAWVTHSGXSELAEPIAVRPTSXXV 188
           AE +KLGV++ YFP+FVS+AALEREKTHIADFAPEVAWVT SG SELAEPIA+RPTS  V
Sbjct: 583 AEIKKLGVENVYFPMFVSHAALEREKTHIADFAPEVAWVTRSGQSELAEPIAIRPTSETV 642

Query: 189 MYPAYAKWIQSHRDLXLKLNXW 254
           MYPAYAKWIQSHRDL L  N W
Sbjct: 643 MYPAYAKWIQSHRDLPLLFNQW 664



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = +2

Query: 254 DNVVRWEFKQPQPFLXXREFLWQEGHTA 337
           +NVVRWEFK PQPFL  REFLWQEGHTA
Sbjct: 665 NNVVRWEFKHPQPFLRTREFLWQEGHTA 692


>SB_56518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 2/51 (3%)
 Frame = +1

Query: 511 RXVQGATSHHLGQNFSKMFEIVYDDAE--TLEKNYVYQNSWGFTTRTIGVM 657
           R +QGATSHHLGQNFSKMF+IV++D +    EK YVYQNSWG TTRTIGV+
Sbjct: 49  RGIQGATSHHLGQNFSKMFDIVFEDPDPNVQEKRYVYQNSWGITTRTIGVL 99



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +2

Query: 380 LDLYARVYEELLAIPVIKGRKTEKEKFAGGDYTTTVEAYVPAS 508
           L LY ++YE L+AIP I GRKTEKEKFAGGD+TTTVE Y+ AS
Sbjct: 5   LGLYQQIYEYLMAIPTICGRKTEKEKFAGGDFTTTVEVYISAS 47


>SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)
          Length = 553

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/81 (23%), Positives = 40/81 (49%)
 Frame = +3

Query: 21  KLGVKDGYFPIFVSNAALEREKTHIADFAPEVAWVTHSGXSELAEPIAVRPTSXXVMYPA 200
           +L + DG +   V+N  +  +  H +DFA +  W+           + V+P     ++  
Sbjct: 349 RLDLSDGPYECAVTNVVVPNKWLHFSDFA-QTLWIY----------VKVKPDQRKTIH-- 395

Query: 201 YAKWIQSHRDLXLKLNXWTTS 263
           YA+W +  R+  ++L+ ++TS
Sbjct: 396 YAQWPKPGRNTSIQLSHYSTS 416


>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 800

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 322 GRTHCFXXQRGGGRRXLNXXRF-ICSRIRRVASDTGDQRS*NREGEVCWRRLHHHGRSLR 498
           GRT CF     G ++     +  I   +  +  + G     + + E  +R L+HH R LR
Sbjct: 523 GRTGCFVATSIGIKQIQKENKVDILKIVCGMRMERGGMVETDSQYEFVYRALYHHWRQLR 582

Query: 499 T-GQRRXVQG 525
           T G RR   G
Sbjct: 583 TSGGRRSTAG 592


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 475 HHHGRSLRTGQRRXVQGATSHHLGQNFSKMFEIVYDDAETLEK 603
           HHH RS +  + R  +   + HL  + ++      +DAETLE+
Sbjct: 651 HHHHRSKKDRRHRNTKTHHAKHLKGHSARKHRKENNDAETLEE 693


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,618,634
Number of Sequences: 59808
Number of extensions: 282853
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)