Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060106.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...   142   2e-34
U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...   142   2e-34
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    33   0.14 
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    33   0.14 
Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeri...    28   5.4  
AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, al...    28   5.4  

>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score =  142 bits (344), Expect = 2e-34
 Identities = 62/79 (78%), Positives = 71/79 (89%)
 Frame = +3

Query: 18  RKLGVKDGYFPIFVSNAALEREKTHIADFAPEVAWVTHSGXSELAEPIAVRPTSXXVMYP 197
           +KLGVK+ YFP+FVSNAALEREKTHIADFAPEVAWVT +G SE+AEPIA+RPTS  VMYP
Sbjct: 144 KKLGVKNCYFPMFVSNAALEREKTHIADFAPEVAWVTRAGNSEMAEPIAIRPTSETVMYP 203

Query: 198 AYAKWIQSHRDLXLKLNXW 254
           +Y KW+QSHRDL +KLN W
Sbjct: 204 SYKKWVQSHRDLPIKLNQW 222



 Score =  122 bits (293), Expect = 3e-28
 Identities = 57/81 (70%), Positives = 61/81 (75%)
 Frame = +2

Query: 257 NVVRWEFKQPQPFLXXREFLWQEGHTAXXXKXXXXXXXLIXLDLYARVYEELLAIPVIKG 436
           NVVRWEFK P PFL  REFLWQEGHTA              LDLYA VY +LLAIPV+KG
Sbjct: 224 NVVRWEFKHPTPFLRTREFLWQEGHTAFANPADAEKEVFQILDLYAGVYTDLLAIPVVKG 283

Query: 437 RKTEKEKFAGGDYTTTVEAYV 499
           RK+EKEKFAGGD+TTTVEAYV
Sbjct: 284 RKSEKEKFAGGDFTTTVEAYV 304



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
 Frame = +1

Query: 511 RXVQGATSHHLGQNFSKMFEIVYDD-AETLEKNYVYQNSWGFTTRTIGVMV 660
           R +QGATSHHLGQNFSKMF+I Y+D A+  E+ + +QNSWG +TRTIG MV
Sbjct: 309 RGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQNSWGLSTRTIGAMV 359


>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score =  142 bits (344), Expect = 2e-34
 Identities = 62/79 (78%), Positives = 71/79 (89%)
 Frame = +3

Query: 18  RKLGVKDGYFPIFVSNAALEREKTHIADFAPEVAWVTHSGXSELAEPIAVRPTSXXVMYP 197
           +KLGVK+ YFP+FVSNAALEREKTHIADFAPEVAWVT +G SE+AEPIA+RPTS  VMYP
Sbjct: 144 KKLGVKNCYFPMFVSNAALEREKTHIADFAPEVAWVTRAGNSEMAEPIAIRPTSETVMYP 203

Query: 198 AYAKWIQSHRDLXLKLNXW 254
           +Y KW+QSHRDL +KLN W
Sbjct: 204 SYKKWVQSHRDLPIKLNQW 222



 Score =  122 bits (293), Expect = 3e-28
 Identities = 57/81 (70%), Positives = 61/81 (75%)
 Frame = +2

Query: 257 NVVRWEFKQPQPFLXXREFLWQEGHTAXXXKXXXXXXXLIXLDLYARVYEELLAIPVIKG 436
           NVVRWEFK P PFL  REFLWQEGHTA              LDLYA VY +LLAIPV+KG
Sbjct: 224 NVVRWEFKHPTPFLRTREFLWQEGHTAFANPADAEKEVFQILDLYAGVYTDLLAIPVVKG 283

Query: 437 RKTEKEKFAGGDYTTTVEAYV 499
           RK+EKEKFAGGD+TTTVEAYV
Sbjct: 284 RKSEKEKFAGGDFTTTVEAYV 304



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
 Frame = +1

Query: 511 RXVQGATSHHLGQNFSKMFEIVYDD-AETLEKNYVYQNSWGFTTRTIGVMV 660
           R +QGATSHHLGQNFSKMF+I Y+D A+  E+ + +QNSWG +TRTIG MV
Sbjct: 309 RGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQNSWGLSTRTIGAMV 359


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
 Frame = +1

Query: 391 CSRIRRVASDTGDQRS*NREGEVCWRRLH------HHGRSLRTGQR-RXVQGATSHHLGQ 549
           CS   ++A D G Q +   EGE CW  +H        G  +R G     V  AT  +L  
Sbjct: 9   CSSNDKLAFDVGVQET--NEGEACWWTIHPASKQRSEGEKVRVGDDVILVSVATERYLHM 66

Query: 550 NFSKMFEIVYDDAETLEKNYVYQNSWGFTTRTIGVMVFG 666
            +SK + ++    +TL  N    +S    TR +G  +FG
Sbjct: 67  AYSKGYMVIASFHQTL-WNIQSVSSGSMRTRNMG-FLFG 103


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
 Frame = +1

Query: 391 CSRIRRVASDTGDQRS*NREGEVCWRRLH------HHGRSLRTGQR-RXVQGATSHHLGQ 549
           CS   ++A D G Q +   EGE CW  +H        G  +R G     V  AT  +L  
Sbjct: 130 CSSNDKLAFDVGVQET--NEGEACWWTIHPASKQRSEGEKVRVGDDVILVSVATERYLHM 187

Query: 550 NFSKMFEIVYDDAETLEKNYVYQNSWGFTTRTIGVMVFG 666
            +SK + ++    +TL  N    +S    TR +G  +FG
Sbjct: 188 AYSKGYMVIASFHQTL-WNIQSVSSGSMRTRNMG-FLFG 224


>Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical
           protein F21G4.1 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 409 VASDTGDQRS*NREGEVCWRRLHHH 483
           ++ DT  +R  + +GE CWR  H H
Sbjct: 128 MSCDTNGRREISSQGEDCWREHHEH 152


>AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 121 HATSGAKSAMCVFSRSSAAFDTNIGKYPSLTPSFRN 14
           H     K+AM +F      F   IGKYP LT  F+N
Sbjct: 262 HQCFSKKTAMILFLNKIDIFKEKIGKYP-LTTCFKN 296


>AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, alpha
           subunit protein 11 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 121 HATSGAKSAMCVFSRSSAAFDTNIGKYPSLTPSFRN 14
           H     K+AM +F      F   IGKYP LT  F+N
Sbjct: 262 HQCFSKKTAMILFLNKIDIFKEKIGKYP-LTTCFKN 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,176
Number of Sequences: 27780
Number of extensions: 204728
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)