Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060105.seq
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             114   7e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          101   6e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 78   6e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.056
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.17 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.39 
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.6  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.1  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)                       29   2.8  
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  114 bits (274), Expect = 7e-26
 Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +3

Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 435 TREHALLAFTLGVKQLIVGVNKMDS--LNHHTVSP 533
           TREHA+L  +LGV QLIV +NK+D   L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  101 bits (242), Expect = 6e-22
 Identities = 43/84 (51%), Positives = 61/84 (72%)
 Frame = +3

Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
           +++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269

Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
           TREHA+LA T GVK L++ VNKMD
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMD 293



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +2

Query: 125 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 244
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ERD
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +2

Query: 521 YSEPRFEEIKKEVSSYIKKIGYNP 592
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +2

Query: 41  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 187
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 34/36 (94%), Positives = 35/36 (97%)
 Frame = +3

Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 362
           IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25  IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +2

Query: 185 MGKGSFKYAWVLDKLKAERD 244
           MGKGSFKYAWVLDKLKAER+
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = +3

Query: 252 HIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 431
           HI   L K  + +  +T ID PGH  F      G +  D  VL+VAA  G      ++  
Sbjct: 64  HIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTV 118

Query: 432 QTREHALLAFTLGVKQLIVGVNKMD 506
           ++  HA+ A       LIV +NK+D
Sbjct: 119 ESIRHAMHAKV----PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 485
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 486 VGVNKMD 506
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 41  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +2

Query: 461 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYNP---AAVAFVPISGWAR 631
           H   + + RR ++N   +   + P+FE++K + +S  KKI  N       A +P   +A 
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMNDIKRLEAALIPFRDFA- 167

Query: 632 RQHVWSLQ 655
             H+++LQ
Sbjct: 168 SLHLFALQ 175


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +3

Query: 261 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 440
           I  +  +     +  +D PGH  F      G    D  +++VAA             QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180

Query: 441 EHALLAFTLGVKQLIVGVNKMDSLN 515
           E    A   GV  +I  +NK+D  N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 234 LSVTRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
           L+  R    +   +F+     + IID PGH  F      G+S  D A+L+V
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 56  THINIVVIGHVDSGKSTTTGHLIY 127
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
          Length = 125

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
 Frame = +2

Query: 431 SNP*ACLARFHPRC-----QTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYNP- 592
           +N  A L RF   C     ++A RR ++N   +   + P+F+ +K + S   KKI  N  
Sbjct: 25  NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMNDI 84

Query: 593 --AAVAFVPISGWARRQHVWSLQ 655
                A +P   +A   H++ LQ
Sbjct: 85  KRLEAALIPFRDFA-SLHLFVLQ 106


>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 461 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYNP---AAVAFVPISGWAR 631
           H   ++A RR ++N   +   + P+F+ +K + S   KKI  N       A +P   +A 
Sbjct: 8   HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMNDIKRLEAALIPFRDFA- 66

Query: 632 RQHVWSLQ 655
             H++ LQ
Sbjct: 67  SLHLFVLQ 74


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 65   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 163
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 348 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTV 527
           TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G+    +++ HT 
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 528 S 530
           +
Sbjct: 849 A 849


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,085,388
Number of Sequences: 59808
Number of extensions: 461945
Number of successful extensions: 1390
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)