Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060104.seq
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.3  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   5.3  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   5.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.1  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   7.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   9.3  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.3  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -3

Query: 417 DETSNWHWSIMRISVIETLCA 355
           D+ S+++W+++ I+V   +CA
Sbjct: 915 DQWSSFYWNLLPIAVFILVCA 935



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 473 WVWACWLLVMMTRXPHI 523
           W+W  WLL       HI
Sbjct: 452 WIWLVWLLSQAWISVHI 468


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -3

Query: 417 DETSNWHWSIMRISVIETLCA 355
           D+ S+++W+++ I+V   +CA
Sbjct: 915 DQWSSFYWNLLPIAVFILVCA 935



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 473 WVWACWLLVMMTRXPHI 523
           W+W  WLL       HI
Sbjct: 452 WIWLVWLLSQAWISVHI 468


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 306 NSNMFINRNNFLLICGQSLTARFNAINT 223
           +SN+ IN+  FLL C + L      +N+
Sbjct: 58  SSNVGINKWRFLLQCLEDLDRSLRKLNS 85


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 571 PSHDNQSSWPDGQVW*NMRXPGHHNQQP 488
           P H  Q     GQ   NM   G  +QQP
Sbjct: 181 PHHQQQHMMYGGQQGANMHQQGPPHQQP 208


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 503 MTRXPHILPDLSVRPTTLIVVRWAIG 580
           +T  P I  +L++   +L V+ WA+G
Sbjct: 164 VTGTPIIFHNLTLITYSLCVISWAVG 189


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 503 MTRXPHILPDLSVRPTTLIVVRWAIG 580
           +T  P I  +L++   +L V+ WA+G
Sbjct: 164 VTGTPIIFHNLTLITYSLCVISWAVG 189


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 571 PSHDNQSSWPDGQVW*NMRXPGHHNQQP 488
           P H  Q     GQ   NM   G  +QQP
Sbjct: 183 PHHQQQHMMYGGQQGANMHQQGPPHQQP 210


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 473 WVWACWLLVMMTRXPHI 523
           W+W  WLL       HI
Sbjct: 219 WIWLVWLLSQAWISVHI 235


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 241 FQRYQHRIVLILQTNGCRTKFHSFHCILPL 152
           ++ + HR  L    N C+  ++ FH  L L
Sbjct: 126 YEDFWHRYTLSFIENYCQFLYNCFHSTLLL 155


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 135 RTPYCDVAIVLVPEHF 88
           R P CD A+ ++P+ F
Sbjct: 159 RAPPCDPAVCVLPDCF 174


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 473 WVWACWLL 496
           W+W  WLL
Sbjct: 465 WIWLLWLL 472


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 473 WVWACWLL 496
           W+W  WLL
Sbjct: 465 WIWLLWLL 472


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 473 WVWACWLL 496
           W+W  WLL
Sbjct: 465 WIWLLWLL 472


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 473 WVWACWLL 496
           W+W  WLL
Sbjct: 465 WIWLLWLL 472


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 294 TYWNFYIRSYCR 329
           T W  Y+R YC+
Sbjct: 57  TCWIIYVRIYCK 68


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 306 NSNMFINRNNFLLICGQSLTARFNAINT 223
           N   FIN    LL C Q++      INT
Sbjct: 6   NHKKFINTTKLLLWCDQTIGLITFDINT 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,154
Number of Sequences: 336
Number of extensions: 3681
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)