Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060104.seq
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 137 2e-33
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 76 4e-15
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 64 2e-11
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 63 3e-11
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 56 4e-09
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 52 6e-08
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 49 7e-07
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 30 0.36
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 27 2.5
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 3.3
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 26 4.4
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.4
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.4
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 137 bits (331), Expect = 2e-33
Identities = 69/141 (48%), Positives = 88/141 (62%)
Frame = +1
Query: 91 MFRNQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ 270
MFRNQYD D T WSPQGRLHQV + + + +++ E LS+YQ
Sbjct: 1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ 60
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450
KK+I ID+HIGI+I+GL DAR+LS YM+ E L+ + P+PV RL+S V K QI T
Sbjct: 61 KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINT 120
Query: 451 QRYDKRPLGVGLLVAGYDDQG 513
Q Y +RP GVG LV GYD+ G
Sbjct: 121 QEYGRRPYGVGFLVIGYDESG 141
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 76.2 bits (179), Expect = 4e-15
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Frame = +1
Query: 91 MFRNQYDSDVTVWSPQGRLHQVGVCNGSCE--TWFCNHWSEE*GLCGVDSVETRCERLSA 264
M R++YD V +SP+GRL QV + + + +++ + GV+ T S
Sbjct: 3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESH 62
Query: 265 YQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGN---- 432
+K+ ID HIG +ISGLTADAR + + R + NHR+++D P + S+ +
Sbjct: 63 SVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALR 122
Query: 433 --KMQICTQRYDKRPLGVGLLVAGYDDQGXSYF 525
+ + +R RP GV LL+AG D+ G +
Sbjct: 123 FGEGEDGEERIMSRPFGVALLIAGIDEHGPQLY 155
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 63.7 bits (148), Expect = 2e-11
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCG-----VDSVETRCERL--SA 264
+D +TV+SP+GRL+QV + F N G+ G V S + ++L ++
Sbjct: 7 FDRTITVFSPEGRLYQVEYAFKA----FNNAGITSVGVTGKNCACVISQKKVPDKLIDAS 62
Query: 265 YQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQI 444
K + PI + IG ++G ADAR R+E Y + PMP L + N Q+
Sbjct: 63 TVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQV 122
Query: 445 CTQRYDKRPLGVGLLVAGYDDQ-GXSYF 525
TQR RPLGV + + DD+ G S F
Sbjct: 123 STQRAAMRPLGVAMTLVAVDDEIGPSLF 150
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 63.3 bits (147), Expect = 3e-11
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCE--TWFCNHWSEE*GLCGVDSVET-RCERLSAYQKK 276
YD ++V+SP GRL QV + T E + GV+ + + +S +QK
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQK- 62
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 456
I +D H+ ++ +GL ADAR+L R E NH+ + P+ + L V Q TQ
Sbjct: 63 IAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQS 122
Query: 457 YDKRPLGVGLLVAGYD 504
RP GV L+AG+D
Sbjct: 123 GGVRPFGVSTLIAGFD 138
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 56.4 bits (130), Expect = 4e-09
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ----- 270
YDS T++SP+GRL+QV + NH G+ D + E+ +
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAI-----NHAGVALGIVAKDGIVLAAEKKVTSKLLEQE 59
Query: 271 ---KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ 441
+K+ I +++ +++GLTADA +L Y R + + + MP +L+ V + Q
Sbjct: 60 ESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQ 119
Query: 442 ICTQRYDKRPLGVGLLVAGYD 504
TQ RP GV L AG+D
Sbjct: 120 GYTQYGGLRPFGVSFLYAGWD 140
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 52.4 bits (120), Expect = 6e-08
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Frame = +1
Query: 127 WSPQGRLHQVGVCNGSCETWF-CNHWSEE*G-LCGVDSVETRCERLSAYQKKIIPIDEHI 300
+SP GRL Q + E C E G + ++ V T +I +D HI
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHI 73
Query: 301 GISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGV 480
GI+ +G D + + + R E + R ++ +P+P + +GN +Q+ T RP GV
Sbjct: 74 GIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGV 133
Query: 481 GLLVAGYDDQG 513
VA YD +G
Sbjct: 134 MSFVATYDSEG 144
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 48.8 bits (111), Expect = 7e-07
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 8/164 (4%)
Frame = +1
Query: 100 NQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCER-------L 258
++Y +T +SP G+L Q+ + N G+ D V E+ +
Sbjct: 3 DKYAFSLTTFSPNGKLVQIEYALNAV-----NAGVTSVGIKATDGVVLATEKKPTSELAI 57
Query: 259 SAYQKKIIPIDEHIGISISGLTADARML-SRYMRTECLNHRYSHDAPMPVGRLISSVGNK 435
A +K+ I IG+ SG+ D R+L + + ++ ++ P L+ + +
Sbjct: 58 GASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASV 117
Query: 436 MQICTQRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRA 567
MQ TQ RP GV LLVAG D++G S + ++ YF +A
Sbjct: 118 MQESTQSGGVRPFGVSLLVAGMDEKGPSLY-QVDPSGTYFAWKA 160
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 29.9 bits (64), Expect = 0.36
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 274 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHR--YSHDAPMPVGRLISSVGNKMQIC 447
K+ + ++I SG AD + ++ ++ +R + HD + ++S ++C
Sbjct: 57 KLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLAS-----EMC 111
Query: 448 TQRYDKRPLGVGLLVAGYDDQ 510
Q +K L GL+VAGYD++
Sbjct: 112 YQ--NKNMLSAGLIVAGYDEK 130
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -1
Query: 260 DNRSQRVSTLSTPHSPYSSDQWLQNQVSQLPLH---TPT*WRRP*GLH 126
D ++T P S Y S +W + QLPL T +RR G H
Sbjct: 230 DEERYLIATSEQPISAYHSGEWFEKPSEQLPLKYAGYSTCYRREAGSH 277
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 280 IPIDEHIGISISGLTADARMLSRYMRTE 363
+PID G I LT D+ ++ Y +TE
Sbjct: 231 VPIDPKFGEMIENLTPDSNIVHLYSKTE 258
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +1
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450
KK+I I+ ++ +++G AD + + EC H+ + + V S+ + T
Sbjct: 93 KKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISV----SAASKILSNIT 148
Query: 451 QRYDKRPLGVGLLVAGYDDQGXSYF 525
Y L +G ++AG G + +
Sbjct: 149 YSYKGYGLSMGTMLAGTGKGGTALY 173
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 276 NYSY**TYWNFYIRSYCRCSYAESLHAHRVSQ-SPIFS*C 392
NYS YW+F++RS+ + +H H + + ++S C
Sbjct: 14 NYSKRKNYWHFWLRSFMSNNRKFLVHIHLIPHLNSLYSIC 53
>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 648 QXPWNVFENASSR 610
Q PWNVF+NA R
Sbjct: 93 QEPWNVFQNAKKR 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,754
Number of Sequences: 5004
Number of extensions: 58380
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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